SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56590 | AT | Annotation by Michelle Graham. TAIR10: Clathrin adaptor complexes medium subunit family protein | chr1:21202250-21204697 REVERSE LENGTH=415 | SoyBase | E_val: 0 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0030244 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0030125 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: clathrin vesicle coat | SoyBase | N/A | ISS |
| KOG2740 | KOG | Clathrin-associated protein medium chain | JGI | ISS | |
| PTHR11998 | Panther | CLATHRIN COAT ASSEMBLY PROTEIN | JGI | ISS | |
| PTHR11998:SF4 | Panther | MU-ADAPTIN 3A | JGI | ISS | |
| PF00928 | PFAM | Adaptor complexes medium subunit family | JGI | ISS | |
| UniRef100_B9RFL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Clathrin coat adaptor ap3 medium chain, putative n=1 Tax=Ricinus communis RepID=B9RFL9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JR40 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JR40_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g38950 not represented in the dataset |
Glyma03g38950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g41520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g230200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g38950.2 sequence type=transcript gene model=Glyma03g38950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTGGATGGGCAATGATCAGTGGTGTCTCAAGGACGAGGAAACTAAGCTTTGATTTAGAGAGACAAAGAGAGCGAAAGATGTTGCAGTGCATTTTTCTTCTGTCAGATTCCGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCCATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCCTTCAAGCAACAACCAGTTATTGCTTCTCCTACCCATTATCTATTCCAAGTTTTTCGCGAGGGAATCACCTTTTTGGCCTGCACTCAAGTCGAAATGCCGCCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAATGATTATCTTGGGGGGTTGAATGAAGACTTGATCAAAGACAACTTTATCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCTCTAACTACGGAACCTAATATCCTGCAAGAGATGATAGCTCCACCGAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTTCCAGGTGCTACTGCGTCTCTTGTTCCCTGGAGAACGGCAGACACAAAGTATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGTTCTGGTGAAATGTGAGATCAATGGTGAGGTTCAAGTGAATTCCCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTGCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCAATCAAATTCTTTCATTCGTGCCTCCTGATGGACGATTTAAGCTTATGAGTTACAGAGTTGGAAAATTGAAGAACACCCCAATATATGTTAAGCCACAATTCACTTCAGATGGTGGAAGATGCCGTGTTAGTGTATTGGTTGGCATAAGAAATGATCCTGGAAAGACAATTGATAATGTTACTGTGCAGTTTCAACTTCCTTCTTGCATCTTATCAGCTGATCTGAGTTCAAATTATGGAATAGTAAACATCCTTGCTAACAAGATATGCTCTTGGTCCATTGGTCGGATCCCAAAGGATAAGGCCCCTTCAATGTCGGGAACATTGGTGCTGGAGACTGGATTGGAGCGTCTTCATGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTAGATCTAAAGACCGTACCTTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGGGAATTTGAAGTCAGGTCATAATTTTGTATTTACCATTGAGTGATCTAAGACTTGTAATGATTCTGGACATGAAATTTTGTTGCATGTACCCGGCTAGTTTCATTGTAAAGAGTTGATAGTGTTCTCTTCAGATTTCAAATTATTTTATTTTTAGTAGTGAAATTTGTCTCGGCTATTTCTGGATTTATGAGAGAATCGCACGAGTTGTATTTTGAATCTGATTTCTTTCATTAACGGTTGATATTGTTGAGAATGAATTGTCGTTTTTTAA
>Glyma03g38950.1 sequence type=CDS gene model=Glyma03g38950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCAGTGCATTTTTCTTCTGTCAGATTCCGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCCATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCCTTCAAGCAACAACCAGTTATTGCTTCTCCTACCCATTATCTATTCCAAGTTTTTCGCGAGGGAATCACCTTTTTGGCCTGCACTCAAGTCGAAATGCCGCCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAATGATTATCTTGGGGGGTTGAATGAAGACTTGATCAAAGACAACTTTATCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCTCTAACTACGGAACCTAATATCCTGCAAGAGATGATAGCTCCACCGAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTTCCAGGTGCTACTGCGTCTCTTGTTCCCTGGAGAACGGCAGACACAAAGTATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGTTCTGGTGAAATGTGAGATCAATGGTGAGGTTCAAGTGAATTCCCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTGCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCAATCAAATTCTTTCATTCGTGCCTCCTGATGGACGATTTAAGCTTATGAGTTACAGAGTTGGAAAATTGAAGAACACCCCAATATATGTTAAGCCACAATTCACTTCAGATGGTGGAAGATGCCGTGTTAGTGTATTGGTTGGCATAAGAAATGATCCTGGAAAGACAATTGATAATGTTACTGTGCAGTTTCAACTTCCTTCTTGCATCTTATCAGCTGATCTGAGTTCAAATTATGGAATAGTAAACATCCTTGCTAACAAGATATGCTCTTGGTCCATTGGTCGGATCCCAAAGGATAAGGCCCCTTCAATGTCGGGAACATTGGTGCTGGAGACTGGATTGGAGCGTCTTCATGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTAGATCTAAAGACCGTACCTTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGGGAATTTGAAGTCAGGTCATAA >Glyma03g38950.2 sequence type=CDS gene model=Glyma03g38950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCAGTGGTGTCTCAAGGACGAGGAAACTAAGCTTTGATTTAGAGAGACAAAGAGAGCGAAAGATGTTGCAGTGCATTTTTCTTCTGTCAGATTCCGGAGAGGTAATGCTAGAGAAACAGCTTAGTGGGCACCGCGTAGATCGCTCCATATGTGCCTGGTTCTGGGACCAAGCCATTTCTCAACCTGATTCCTTCAAGCAACAACCAGTTATTGCTTCTCCTACCCATTATCTATTCCAAGTTTTTCGCGAGGGAATCACCTTTTTGGCCTGCACTCAAGTCGAAATGCCGCCATTGATGGCCATTGAGTTCCTTTGTAGGGTAGCTGATGTTCTCAATGATTATCTTGGGGGGTTGAATGAAGACTTGATCAAAGACAACTTTATCATTGTATATGAGCTGCTGGATGAGATGATAGACAATGGCTTCCCTCTAACTACGGAACCTAATATCCTGCAAGAGATGATAGCTCCACCGAATATTGTTAGCAAAGTCTTGAGTGTTGTGACTGGCAGCAGCTCCAATGTGAGTGACACCCTTCCAGGTGCTACTGCGTCTCTTGTTCCCTGGAGAACGGCAGACACAAAGTATGCCAACAATGAAGTTTATGTAGATCTTGTTGAAGAAATGGATGCAACAATAAACAGGGATGGAGTTCTGGTGAAATGTGAGATCAATGGTGAGGTTCAAGTGAATTCCCATATCACAGGTCTTCCTGATTTGACTCTTTCATTTGCAAATCCTTCAATCCTTGATGATGTGAGGTTCCATCCCTGTGTTAGATATCGGCCCTGGGAATCCAATCAAATTCTTTCATTCGTGCCTCCTGATGGACGATTTAAGCTTATGAGTTACAGAGTTGGAAAATTGAAGAACACCCCAATATATGTTAAGCCACAATTCACTTCAGATGGTGGAAGATGCCGTGTTAGTGTATTGGTTGGCATAAGAAATGATCCTGGAAAGACAATTGATAATGTTACTGTGCAGTTTCAACTTCCTTCTTGCATCTTATCAGCTGATCTGAGTTCAAATTATGGAATAGTAAACATCCTTGCTAACAAGATATGCTCTTGGTCCATTGGTCGGATCCCAAAGGATAAGGCCCCTTCAATGTCGGGAACATTGGTGCTGGAGACTGGATTGGAGCGTCTTCATGTCTTTCCCACATTTCAAGTGGGTTTTAGGATTATGGGTGTTGCCCTCTCTGGTCTGCAAATAGATAAACTAGATCTAAAGACCGTACCTTACCGTTTTTATAAAGGTTTTCGAGCTCTTACTCGGGCAGGGGAATTTGAAGTCAGGTCATAA
>Glyma03g38950.1 sequence type=predicted peptide gene model=Glyma03g38950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQCIFLLSDSGEVMLEKQLSGHRVDRSICAWFWDQAISQPDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMAIEFLCRVADVLNDYLGGLNEDLIKDNFIIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADTKYANNEVYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFANPSILDDVRFHPCVRYRPWESNQILSFVPPDGRFKLMSYRVGKLKNTPIYVKPQFTSDGGRCRVSVLVGIRNDPGKTIDNVTVQFQLPSCILSADLSSNYGIVNILANKICSWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS* >Glyma03g38950.2 sequence type=predicted peptide gene model=Glyma03g38950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISGVSRTRKLSFDLERQRERKMLQCIFLLSDSGEVMLEKQLSGHRVDRSICAWFWDQAISQPDSFKQQPVIASPTHYLFQVFREGITFLACTQVEMPPLMAIEFLCRVADVLNDYLGGLNEDLIKDNFIIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKVLSVVTGSSSNVSDTLPGATASLVPWRTADTKYANNEVYVDLVEEMDATINRDGVLVKCEINGEVQVNSHITGLPDLTLSFANPSILDDVRFHPCVRYRPWESNQILSFVPPDGRFKLMSYRVGKLKNTPIYVKPQFTSDGGRCRVSVLVGIRNDPGKTIDNVTVQFQLPSCILSADLSSNYGIVNILANKICSWSIGRIPKDKAPSMSGTLVLETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTVPYRFYKGFRALTRAGEFEVRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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