Glyma03g38910 - SoyBase

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Report for Sequence Feature Glyma03g38910

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45176179
stop:	45179418
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g38910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56600	AT	Annotation by Michelle Graham. TAIR10: galactinol synthase 2 \| chr1:21207620-21209291 FORWARD LENGTH=335	SoyBase	E_val: 0	ISS
GO:0006012	GO-bp	Annotation by Michelle Graham. GO Biological Process: galactose metabolic process	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0047216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inositol 3-alpha-galactosyltransferase activity	SoyBase	N/A	ISS
KOG1950	KOG	Glycosyl transferase, family 8 - glycogenin	JGI		ISS
PTHR11183	Panther	GLYCOGENIN	JGI		ISS
PTHR11183:SF2	Panther	GLYCOGENIN-RELATED	JGI		ISS
PF01501	PFAM	Glycosyl transferase family 8	JGI		ISS
UniRef100_A0EVX3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Galactinol synthase n=1 Tax=Ammopiptanthus mongolicus RepID=A0EVX3_9FABA	SoyBase	E_val: 0	ISS
UniRef100_UPI0000F1C1F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0000F1C1F9 related cluster n=1 Tax=unknown RepID=UPI0000F1C1F9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g38910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g38910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g229800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g38910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g38910

Limit To All Plant Sequences

>Glyma03g38910.1   sequence type=CDS   gene model=Glyma03g38910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCTAACATCACCACCGTTGTTGCCAATGCCACCACTGAGCAATTACCCAAAGCTCATGGAGGAAGTAGTGGGCGTGCCTTTGTGACTTTTCTTGCTGGAAACGGTGATTATGTAAAGGGTGTTGTGGGTTTGGCCAAAGGACTGAGAAAGGCCAAAAGCATGTACCCTTTGGTGGTTGCTGTGTTACCAGATGTTCCTGAAGAACATCGTGCGATTCTCAAATCCCAAGGTTGCATTGTCAGGGAGATTGAACCTGTGTACCCTCCTAAGAACCAGACCCAGTTCGCCATGGCCTATTATGTCATCAATTACTCCAAGCTACGTATTTGGGAGTTCGTGGAGTACCAGAAGATGATATACCTAGACGGCGACATCCAAGTTTTTGGAAACATTGACCACTTGTTTGATCTTCCTAATAATTATTTCTATGCGGTGATGGATTGTTTCTGCGAGAAGACTTGGAGCCACACCCCTCAGTTCCAGATTGGGTACTGCCAACAGTGCCCTGATAAGGTTCAATGGCCCTCTCACTTTGGTACCAAACCTCCTCTATATTTCAATGCTGGCATGTTTGTTTATGAGCCTAATCTCAACACCTACCGTCATCTTCTCCAAACTGTCCAAGTCATCAAGCCCACGTCCTTTGCTGAGCAGGACTTTCTGAACATGTACTTCAAGGACAAGTACAAGCCAATACCGAACGTGTACAACCTTGTGCTGGCCATGTTGTGGCGTCACCCTGAGAATGTTGAACTTGATCAAGTTCAAGTGGTTCATTACTGTGCTGCTGGGTCTAAGCCTTGGAGGTTCACTGGGAAGGAAGAGAACATGGATAGGGAAGATATCAAGATGCTTATGAAGAAGTGGTGGGACATATATGAAGATGAGACACTGGACTACAATAACAACTCTGTCAATGTGGAACGTTTCACATCAGTACTATTGGATGCTGGGGGTTTTCAGTTTGTGCCAGCACCTTCTGCTGCCTAA

Predicted protein sequences of Glyma03g38910

Limit To All Plant Sequences

>Glyma03g38910.1   sequence type=predicted peptide   gene model=Glyma03g38910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPNITTVVANATTEQLPKAHGGSSGRAFVTFLAGNGDYVKGVVGLAKGLRKAKSMYPLVVAVLPDVPEEHRAILKSQGCIVREIEPVYPPKNQTQFAMAYYVINYSKLRIWEFVEYQKMIYLDGDIQVFGNIDHLFDLPNNYFYAVMDCFCEKTWSHTPQFQIGYCQQCPDKVQWPSHFGTKPPLYFNAGMFVYEPNLNTYRHLLQTVQVIKPTSFAEQDFLNMYFKDKYKPIPNVYNLVLAMLWRHPENVELDQVQVVHYCAAGSKPWRFTGKEENMDREDIKMLMKKWWDIYEDETLDYNNNSVNVERFTSVLLDAGGFQFVPAPSAA*

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