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Report for Sequence Feature Glyma03g38870

Feature Type:gene_model
Chromosome:Gm03
Start:45148059
stop:45154474
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g38870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09420AT Annotation by Michelle Graham. TAIR10: glucose-6-phosphate dehydrogenase 4 | chr1:3038640-3041715 REVERSE LENGTH=625 SoyBaseE_val: 0ISS
GO:0006006GO-bp Annotation by Michelle Graham. GO Biological Process: glucose metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0004345GO-mf Annotation by Michelle Graham. GO Molecular Function: glucose-6-phosphate dehydrogenase activity SoyBaseN/AISS
GO:0050661GO-mf Annotation by Michelle Graham. GO Molecular Function: NADP binding SoyBaseN/AISS
KOG0563 KOG Glucose-6-phosphate 1-dehydrogenase JGI ISS
PTHR23429Panther GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD) JGI ISS
PF00479PFAM Glucose-6-phosphate dehydrogenase, NAD binding domain JGI ISS
PF02781PFAM Glucose-6-phosphate dehydrogenase, C-terminal domain JGI ISS
UniRef100_I1JR33UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Glycine max RepID=I1JR33_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JR33UniRef Annotation by Michelle Graham. Best UniRef hit: Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Glycine max RepID=I1JR33_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g38870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38870
ParalogEvidenceComments
Glyma19g41450 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g229400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g38870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g38870
>Glyma03g38870.1   sequence type=CDS   gene model=Glyma03g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTGTCTTTCTCTTCAACCTCGGTTTCGTTCTCGGAATCCTCATTTGCATTCCAAAGACCTGCTCCAGCACATCTTTGCTCAAATTCACTCACCGTTGCATCGAACAACTTTCATTCAGCAACAGGTGGTGGTCGTCTTGTGCTGAATGTTGGAGGCACCTGCTTGTGTCGAAAGTTTCGTGGTTTGAAACTGTGGCTACTTGAGAGACTCAGCTTCCAATTCCAGCCACCAAAGCAACCTAAGAATAGAAACCATCACTTCAGGAATAATTTGGAAAATGAAAAGGGATCGGTTTCTGATTCATCTTCAAATCTTCGTGTTCCTGATGATAAGGTCACTCCGGTGGAGTCTCTATCGTTGCTGCAGACAGGTTTGTCTGGTACTCCCGTGGATGTTGGCAGAAAGCCCTCACTTTGTATTGCTGTCATAGGAGCCACCGGTGAGCTGGCAAAGAGGAAGATTTTCCCTGCTTTGTTTGCCCTCTACTACAGTGGCTTTCTTCCCGAGAATGTAGGCATTTTTGGTTATTCAAGGAAGGATATAACTGATGAAGACCTGCGATCTATTATAGCTTCAACATTAACATGCCGAGTTGATCATCAAGAAAATTGTGACAACAAATTAGATGCTTTCCTTAGTAAAACATATTACATTAATGGAGGCTATGACAATAAATATGGGATGTCCATGCTGAATTCTCGAATGGAGCAAATTGAGGGAGGATCCAAAACCAACAGGATATTCTACCTTTCTGTGCCACAAGAAGCACTTTTGGATGTTGCTTCATGCCTTGCAAGCAGTGCTCAGACCCAGAATGGATGGAATCGCATAATATTTGAGAAGCCATTTGGCTTTGATGCACGTTCTTCCGATAGGCTGACACAATATATTCTTTCAAACTTTCAGGAAAAGCAAATATTTAGGATTGATCATCTACTAGGAAGGAATCTCATTGAAAATCTTACAGTTTTAAGGTTTTCAAATCTAGTTTTTGAGCCACTTTGGAGTCGTACTTACATAGATAATGTACAGGTCATTTTATCAGAGGACTTGGGTGTGCATCCAGGAAGATATTTCAGTGGCTACGGAATTATCCGTGATATTGTTCACTGTCATGTGCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAATAAGCCTTGATGGAGAAGATATTAGAAATGAAAAGCTCAAGGTTTTGAGGTTAATTCGCAAATTGGAGCCGAAGGATGTCATTCTTGGCCAATATAAAGCAAGTGGTGGAGCCAAAGTTGATGCATGCGTAAATGGTCTGACACCTACTTATTTTGCTGCTGCACTATACATTGACAATGCACGATGGGATGGTGTGCCATTTCTGATTAAAACAGGCTTGGGGCTCATCAAACACCAAATGGAGATTCGGATTCAATTTCGCAATGTTCCGGGGAATGTATACCATGAGTGCATCGGGCATAACAGGGACCGTGCCATAAATGAACTCATTCTTCGGGATGTTCCTGATGAAGCTATTTTGGTGAGAGTGAACAATAAGGTTCCAGGACTAGGCCTGCAACTGGACTCTTCAGAATTAAATTTGCTTTACAAGGACAAGTACAACATGGAGGTGCCGGATTCATACGAGCATCTTCTTCTGGATGTCATTGATGGAGACAACCATTTGTTTATGAGAAGTGATGAGTTGGCAGCAGCGTGGACCATTCTAACTCCAATTCTGAATGAGATAGACAAGAACAATATGTCAGTGGAGCTTTATGAGATGGGGGGTCGCGGTCCTATTGGGGCATACTACCTCTGGGCGAAACATGGTGTCCGTTGGGTGGAGGATTAA
Predicted protein sequences of Glyma03g38870
>Glyma03g38870.1   sequence type=predicted peptide   gene model=Glyma03g38870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVSFSSTSVSFSESSFAFQRPAPAHLCSNSLTVASNNFHSATGGGRLVLNVGGTCLCRKFRGLKLWLLERLSFQFQPPKQPKNRNHHFRNNLENEKGSVSDSSSNLRVPDDKVTPVESLSLLQTGLSGTPVDVGRKPSLCIAVIGATGELAKRKIFPALFALYYSGFLPENVGIFGYSRKDITDEDLRSIIASTLTCRVDHQENCDNKLDAFLSKTYYINGGYDNKYGMSMLNSRMEQIEGGSKTNRIFYLSVPQEALLDVASCLASSAQTQNGWNRIIFEKPFGFDARSSDRLTQYILSNFQEKQIFRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIDNVQVILSEDLGVHPGRYFSGYGIIRDIVHCHVLQTIALLAMEPPISLDGEDIRNEKLKVLRLIRKLEPKDVILGQYKASGGAKVDACVNGLTPTYFAAALYIDNARWDGVPFLIKTGLGLIKHQMEIRIQFRNVPGNVYHECIGHNRDRAINELILRDVPDEAILVRVNNKVPGLGLQLDSSELNLLYKDKYNMEVPDSYEHLLLDVIDGDNHLFMRSDELAAAWTILTPILNEIDKNNMSVELYEMGGRGPIGAYYLWAKHGVRWVED*






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