Glyma03g38750 - SoyBase

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Report for Sequence Feature Glyma03g38750

Feature Type:	gene_model
Chromosome:	Gm03
Start:	45050953
stop:	45053147
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g38750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27870	AT	Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily \| chr5:9878991-9881806 REVERSE LENGTH=732	SoyBase	E_val: 2.00E-61	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004857	GO-mf	Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
UniRef100_G7KWF3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Medicago truncatula RepID=G7KWF3_MEDTR	SoyBase	E_val: 4.00E-172	ISS
UniRef100_I1JR17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JR17_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g38750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38750

Paralog	Evidence	Comments
Glyma19g41350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g228400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g38750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g38750

Limit To All Plant Sequences

>Glyma03g38750.2   sequence type=CDS   gene model=Glyma03g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGATGATTCAAAAGAGAAGGAAAGGTTGACGTTTAACATAGCGATTATGGTGGCATCCATGATCGCCATTGCAATGGTCACCGTTTCTGTAGTTGCACACACAGACGGTCCCAAACAAGACGCAGGGAAGAATGTGAAGACTCTTCTCTCCGTTTGCTCCAAAACGGAGGATCCAGAAAGCTGTTTCCGCATGCTGAAGCACGTTGGTGAGAAAGCCACAGTTTTGAAAGCGGCTATCAATGCAACCCTCACGGAATTGTTGCTGCAAGAGTCATATAAGGATTGTTTGGAACTGCTGAGTTTAGGAATTGAAGAATTACAATCTTTGTATTTCGTGGCAAGTTTTCATGTAGAGTTGTGCAAACTGAACCTAGATGATGTGATGAACAGCCTAAGTGCTGTCATTTCCTATGAGGTTTTGGGGTATTCATTGAAAGTTCCAGTTCTTCTCACGAGGATAGCCTTATCCATTGTTCATAATTTCTCTGAGAGGCCTAATAGAAGAGAAGCACGACTTATGCTAGAAGAATTTCCAAGGTGGTTCCCAGCAACAGAGAGAAAAATGATAGAGTCTAATCAAGGAGATAATGGTGGTGGTGAACAATGGCCAATAAATGTGGTTGTGGCTCAATATGGAAGACGTCATTTGTCGACCATAGCTGACTCAGTACTCAATGCATGTCCAAAGAATAAAACGATAGCATGTGTTATTTATGTGAAAAGAGGTAAGTATGAGAAGAGAGTGGTGATTCCTAAGGGTGTAAACCAAGTGTTCATGTATGGTGATGGACCTGCGCATACCATTGTCACTGATTCCAACACAAGAGACCCCAAGACACTCACAACCTCCTTTCGAGCAGCTACTTTCGTGGTAATGGGGAAAGGATTCATCTGCAAAGACATGGGTTTCACAGCCCCAGCTGACATTGGAGGAGCACCGACACTCCTAGTCCTTTCTGATCACTCAGCATTCTTCAACTGCAAAATTGATGGTAACGAAGGAACCTTGTTGGCAGTAGCTCAACGCCAATTCTACCGAGACTGCGAGATTCTTGGCCGTGTAACTCAAAACTCACATATCATAGTGAAGCCTCGAAATTCCTCTGATTTGGTTTTAAGAAGAAATGTTGTGAGTGCACAATCCAGGTTAGACAAGCATCAGACAACAGGGTTAGTGATTCAAAACTACACCATCACAGCACATGGACAAAACATGAATACTCTTAATGCTACCACTTACTTGCGATCCCCATATAGTGAGTACTCAAGAACGATCATAATGGAATCATTTATAGGAGATGTGATACATCCAAAAGGTTGGTGTAAATGGAGTGACAATGCCATAGAGACAAGAACTGACAAGAGGGTCAAGTGGAATGGATACAGTACAATTTTTGAGAGAGATCAAATGGTTAGTTACACAGTTGGTCGGTTTGTCCAAACAGACCAATGGTTGCTAAATAGAGGCATTCCTTACGAAATTGGGTTTCTTGTACAGAATTAG

Predicted protein sequences of Glyma03g38750

Limit To All Plant Sequences

>Glyma03g38750.2   sequence type=predicted peptide   gene model=Glyma03g38750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDDSKEKERLTFNIAIMVASMIAIAMVTVSVVAHTDGPKQDAGKNVKTLLSVCSKTEDPESCFRMLKHVGEKATVLKAAINATLTELLLQESYKDCLELLSLGIEELQSLYFVASFHVELCKLNLDDVMNSLSAVISYEVLGYSLKVPVLLTRIALSIVHNFSERPNRREARLMLEEFPRWFPATERKMIESNQGDNGGGEQWPINVVVAQYGRRHLSTIADSVLNACPKNKTIACVIYVKRGKYEKRVVIPKGVNQVFMYGDGPAHTIVTDSNTRDPKTLTTSFRAATFVVMGKGFICKDMGFTAPADIGGAPTLLVLSDHSAFFNCKIDGNEGTLLAVAQRQFYRDCEILGRVTQNSHIIVKPRNSSDLVLRRNVVSAQSRLDKHQTTGLVIQNYTITAHGQNMNTLNATTYLRSPYSEYSRTIIMESFIGDVIHPKGWCKWSDNAIETRTDKRVKWNGYSTIFERDQMVSYTVGRFVQTDQWLLNRGIPYEIGFLVQN*

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