Glyma03g38690 - SoyBase

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Report for Sequence Feature Glyma03g38690

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44995437
stop:	44997548
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g38690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22070	AT	Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein \| chr2:9383602-9385962 FORWARD LENGTH=786	SoyBase	E_val: 6.00E-164	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_F5CAD8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein 65 n=1 Tax=Funaria hygrometrica RepID=F5CAD8_FUNHY	SoyBase	E_val: 0	ISS
UniRef100_UPI00023375B4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023375B4 related cluster n=1 Tax=unknown RepID=UPI00023375B4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g38690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g38690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g227900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g38690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g38690

Limit To All Plant Sequences

>Glyma03g38690.1   sequence type=CDS   gene model=Glyma03g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTATTATGAAACTTGTCTTGCAGTTGCAGCTATTCACAAGCTACCAAAGTGGTGTTCCAAAATTCCACCAATTCTCCTCAGTTCCCGACCTCAAGCATCTCCTCAACAACGCCGCAAAGTTGAAGAGCCTTAAACACGCGACCCAAATCCACTCCCAACTCGTAACAACCAATAATCACGCGTCCCTCGCCAACATCAACACCCTCCTCCTCTTGTATGCAAAATGCGGCTCCATCCACCACACGCTCCTCTTGTTCAACACATACCCTCATCCCTCAACCAACGTCGTCACGTGGACCACACTCATAAACCAACTCTCCCGTTCCAACAAACCCTTCCAAGCCTTGACATTTTTCAACCGCATGAGAACCACTGGCATATACCCAAACCACTTCACCTTCTCAGCGATCTTACCCGCGTGCGCGCACGCAGCGCTCCTTTCAGAGGGCCAACAAATCCACGCATTGATACACAAACACTGCTTCCTAAATGACCCTTTTGTTGCCACCGCGTTGTTAGACATGTACGCTAAGTGTGGCTCCATGTTGTTGGCGGAGAACGTGTTCGACGAAATGCCCCATAGAAACCTCGTTTCATGGAACTCCATGATTGTCGGGTTTGTTAAGAACAAGTTGTACGGTCGTGCCATTGGGGTTTTCAGGGAGGTTCTTTCACTTGGCCCCGACCAAGTTAGTATCTCGAGCGTATTGAGTGCTTGTGCTGGATTGGTTGAGTTAGATTTTGGGAAACAAGTCCATGGGAGCATTGTTAAGCGTGGTTTGGTGGGGTTGGTTTATGTCAAGAACTCGCTGGTGGACATGTATTGCAAATGCGGGCTGTTTGAGGATGCAACCAAGTTGTTCTGTGGTGGTGGAGATAGAGATGTTGTAACGTGGAATGTAATGATCATGGGATGCTTTCGTTGCCGAAATTTTGAACAAGCTTGCACCTATTTCCAAGCTATGATAAGGGAAGGCGTAGAACCCGACGAGGCTTCATACTCTTCTCTTTTTCATGCTTCTGCAAGTATTGCAGCATTAACACAGGGGACCATGATCCATAGTCATGTTTTAAAAACCGGGCATGTGAAAAACTCTCGTATTTCAAGTTCGTTGGTGACTATGTATGGGAAATGTGGAAGCATGTTAGACGCTTATCAAGTTTTTCGAGAAACTAAGGAACATAATGTGGTTTGTTGGACGGCTATGATAACAGTTTTCCATCAACATGGTTGCGCAAATGAGGCGATTAAATTGTTTGAGGAGATGCTCAATGAAGGGGTTGTGCCGGAATACATTACTTTTGTTTCCGTGTTGTCGGCTTGCAGCCATACGGGGAAGATTGATGATGGTTTTAAGTACTTCAATTCCATGGCTAATGTTCATAACATTAAACCCGGGCTTGAGCATTATGCTTGCATGGTTGACTTGCTTGGTCGTGTTGGTCGATTGGAGGAAGCATGTAGGTTCATTGAATCCATGCCATTCGAGCCTGACTCGTTGGTTTGGGGGGCTTTGCTTGGGGCATGTGGAAAACATGCCAATGTTGAAATGGGAAGAGAGGTCGCAGAGAGACTTTTCAAGTTGGAACCGGATAATCCAGGAAACTATATGCTGCTTTCGAATATCTATATAAGACACGGGATGTTGGAAGAAGCTGATGAGGTGAGAAGATTGATGGGGATCAATGGGGTGAGGAAAGAGAGTGGGTGTAGCTGGATTGATGTTAAGAACAGGACCTTTGTTTTCAATGCGAATGATAGGTCACATTCAAGGACACAAGAGATTTATGGAATGCTGCAAAAGTTGAAGGAGTTGATAAAGAGAAGAGGGTATGTGGCTGAGACCCAGTTTGCAACTAACAGTGTGGAAGGCTCTGAAGAGCAGAGTTTGTGGTGTCACAGTGAGAAATTGGCTCTTGCATTTGGTCTTCTGGTCCTCCCACCTGGGTCTCCGGTTAGGATAAAGAAGAATTTGAGGACCTGTGGTGATTGCCATACTGTTATGAAGTTTGCTTCTGAGATTTTTCAGAGAGAAATTATTGTTAGAGATATCAATAGGTTTCATCGATTCACAAATGGATCGTGCTCTTGTATGGATTATTGGTGA

Predicted protein sequences of Glyma03g38690

Limit To All Plant Sequences

>Glyma03g38690.1   sequence type=predicted peptide   gene model=Glyma03g38690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIIMKLVLQLQLFTSYQSGVPKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW*

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