Glyma03g38675 - SoyBase

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Report for Sequence Feature Glyma03g38675

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44987137
stop:	44992668
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g38675

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13600	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr2:5671493-5673586 FORWARD LENGTH=697	SoyBase	E_val: 8.00E-71	ISS
GO:0010182	GO-bp	Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway	SoyBase	N/A	ISS
GO:0080156	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4304	KOG	Transcriptional repressors of the hairy/E(spl) family (contains HLH)	JGI		ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KVK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor PIF3 n=1 Tax=Medicago truncatula RepID=G7KVK4_MEDTR	SoyBase	E_val: 2.00E-163	ISS
UniRef100_I1JR11	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JR11_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g38675

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g38675 not represented in the dataset	Glyma03g38675 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38675

Paralog	Evidence	Comments
Glyma19g41261	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38675 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g38675

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g38675

Limit To All Plant Sequences

>Glyma03g38675.1   sequence type=CDS   gene model=Glyma03g38675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATGCTTTCATTGCCGAAATTTTGAACAAGCTTGCACCTATTTCCAAGCTATGATAAGGGAAGGCGTAGAACCCGACGGGGCTTCATACACTTCTCTTTTTCATGCTTCTGCAAGTATTGCAGCATTAACACAGGGGACCATGATCCATAGTCATGTTTTAAAAACCGGGCATGTGAAAGACTCTCATATTTCAAGTTCGTTGGTGACTATGTATGGGAAATGTGGAAGCATGTTAGACGCTTATCAAGTTTTTCGAGAAACTAAGGAACATTATGTGGTTTGTTGGACGGCTATGATAACAGTTTTCCATCTACATGGTTGCGCAAATGAGGCGATTGAATTGTTTGAGGAGATGCTCAATGAAGGGGTTGTGCCTGAATACATTACTTTTATTTCCATCTTGTCGGTTTGCAGCCATACGGGGAAGATTGATGATGGTTTTAAGTACTTCAATTCCATGGCTAATGTTCATAACATTAAACCCGGGCTTGATCATTATGCTTGCATGGTTGACTTGCTTGGTCGTGTTGGTCGATTGGAGGAAGCATGTAGGTTCATTGAATCCATGCCATTCGAGCCTGACTCGTTGGTTTGGGGGGCTTTGCTTGGGGCATGTGGAAAACATGCCAATGTTGAAATGGGAAGAGAGGCCGCAGAGAGACTTTTCAAGTTGGAACCGGATAATCCAAGAAACTATATGCTGCTTTTGAATATCTATTTAAGACACGGGATGTTGGAAGAAGCTGATGAGGTGAGAAGATTGATGGGGATCAATGGGGTGAGGAAAGAGAGTGGGTGTAGCTGGATTGATGTTAATAACAGGACCTTTGTTTTCTTTGCGAATGATAGGTCACTTTCAAGGACACAAGAGATTTATGGAATGCTGCAAAAGTTGCACGGTTTTCCCTTGATCTCAACCTTGAATCAGTCTCACTGTGGTGTGATGAACAACAACACCACATGTGCAGTTGATCAATCTTCTGTACCCAACAATGATTTGTTTGAGTTGATTTGGGAAAAGGGCCAGATTTCAGTGCAGGGTCAGTCCAGTAGAGCTAGAGTGAGCCCAAATTGTAAAACTTTGCCATCTCACACTCCAATAGGATATGCTAATAATGCTATTACTACCAATACAAGGATGGGGAAGTGTGGGAATTTAGGTGCTGAATTGAATGAAATTAGAAGGCTAGTCCCATCAGGTGAAGTGGATTTGAGTGAAGAAGAGGAAGACATGGTGATGCCTTGGTTCAGTTATGGAAGGGATGATGACTCTTTGCAACATGGATATAGTACTGATTTTTTCCATGAACCATCTGGGGTCATGAATGAGCTTTCAGCATCAAATAATTTTTCTTTGCTAGATAGAAGAAATAATTGTAGTAAGATATTTAGGGACACTCATAAACACTCTCCATTTGCATCCGTTAGATCCAGGGTAGCAGATATAGCTGAAAACAATGCAAATAACGTTCCACCTGGATCAAGTGGTTTTTCTAGCTTAAAGATGGAGAAGCAAGGTCCAGTTATGTGTAGCAATAATAGTTCCACCATGATGAATTTTTCCCATTTTGCAAAACCTGCTGCTATTGTCAAAGCTAACCTTGAGAACATTGGCTTGGCATCAAGATCAGGAAGTGTCGGAATAAAGATAAAAAGTGCTGATGAATCAACAAAAGTTGAATTAAGTCGTGGAGAGCGTCCAAAGAAACCAGCCATACACAATCAAGATCAGGATGTTACTGTTTCTACAAAGGGTGACCCTTCTTGCAACGACGTGTCCAAGGTTGATCAAAATCAAACTTCAAATATAGTTGTTGGTGAAAGTGGGAATAAAGGACACGAAGCTGTTGAAAAAGGAGTGGAGCCAGCTGTGGTATCTTCCTCTGTTTGCTCTGGCAATGGTGCAGAGAGGGACACTGAGGACTCTGAGAGCCAAAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTCAAAAAGGAAGTTCATGCACGAGGATTTGGAGCCACGAGAGGCCGTTCAGCAGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCGATGAGAAGATGCGTGCGTTACAAGAACTCATACCAAATTGCAATAAGGCGGATAAAGCTTCAATGTTGGATGAGGCGATAGAGTATCTCGAAACACTTCAACTCCAGCTTCAAATTATGTCAATGGGAAGTGGTTTATATGTGCCTGCAATGATGTTACCTCCGGGAATGCAACACATGCATGCACCACATATGGGTCCTTTTTCACCTATAGGTGTTGGGATGCAAATGAGGTTAGGAATGGGCATGCTTGATGCTAATGTTATTGAGTCCTCTAGATTTATTCAAGTGCCCCAAATGCAAGGAACTCAACTTCCCATTACACATACACCTGGATCCTCTGTTTTACATGGGATGGCAAGACCAAATGCTCAAGTGTTTGGGCATCATCCTAGTCAGGTTCACCCCATGCCAATGCCACATGCTCCCATCTTTTCTTTTCCAGGAGAACCTTTTATCAACCCATCATCAACTTTAGGACTGATGGAAACTGTGGATAAGGCTTCTTCAGCCTTTGGCTTAAAGGATCAGATTCCACAACTTGTACAAAACACCAACAACGGTTGTAATTCAACAAATCAGATGTCAACACAGTGTGAAGCAACCATTGGTGGATTTGAACACTCAACTTTGGTACTTAATAGTGGTCATGCCACTTCGGCAAATGACAGAGGAGCTAGTAATCCCAGTAAAGAAGATAAACACTTGTGA

Predicted protein sequences of Glyma03g38675

Limit To All Plant Sequences

>Glyma03g38675.1   sequence type=predicted peptide   gene model=Glyma03g38675   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCFHCRNFEQACTYFQAMIREGVEPDGASYTSLFHASASIAALTQGTMIHSHVLKTGHVKDSHISSSLVTMYGKCGSMLDAYQVFRETKEHYVVCWTAMITVFHLHGCANEAIELFEEMLNEGVVPEYITFISILSVCSHTGKIDDGFKYFNSMANVHNIKPGLDHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREAAERLFKLEPDNPRNYMLLLNIYLRHGMLEEADEVRRLMGINGVRKESGCSWIDVNNRTFVFFANDRSLSRTQEIYGMLQKLHGFPLISTLNQSHCGVMNNNTTCAVDQSSVPNNDLFELIWEKGQISVQGQSSRARVSPNCKTLPSHTPIGYANNAITTNTRMGKCGNLGAELNEIRRLVPSGEVDLSEEEEDMVMPWFSYGRDDDSLQHGYSTDFFHEPSGVMNELSASNNFSLLDRRNNCSKIFRDTHKHSPFASVRSRVADIAENNANNVPPGSSGFSSLKMEKQGPVMCSNNSSTMMNFSHFAKPAAIVKANLENIGLASRSGSVGIKIKSADESTKVELSRGERPKKPAIHNQDQDVTVSTKGDPSCNDVSKVDQNQTSNIVVGESGNKGHEAVEKGVEPAVVSSSVCSGNGAERDTEDSESQSEDVEEESVGVKKEVHARGFGATRGRSAEVHNLSERRRRDRIDEKMRALQELIPNCNKADKASMLDEAIEYLETLQLQLQIMSMGSGLYVPAMMLPPGMQHMHAPHMGPFSPIGVGMQMRLGMGMLDANVIESSRFIQVPQMQGTQLPITHTPGSSVLHGMARPNAQVFGHHPSQVHPMPMPHAPIFSFPGEPFINPSSTLGLMETVDKASSAFGLKDQIPQLVQNTNNGCNSTNQMSTQCEATIGGFEHSTLVLNSGHATSANDRGASNPSKEDKHL*

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