SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11160 | AT | Annotation by Michelle Graham. TAIR10: Translation initiation factor 2, small GTP-binding protein | chr4:6803846-6806726 FORWARD LENGTH=743 | SoyBase | E_val: 0 | ISS |
| GO:0006413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational initiation | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0003743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1145 | KOG | Mitochondrial translation initiation factor 2 (IF-2; GTPase) | JGI | ISS | |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | ISS | |
| PTHR23115:SF41 | Panther | JGI | ISS | ||
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | ISS | |
| PF11987 | PFAM | Translation-initiation factor 2 | JGI | ISS | |
| UniRef100_G7JWF0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Translation initiation factor IF-2 n=1 Tax=Medicago truncatula RepID=G7JWF0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339ECC | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339ECC related cluster n=1 Tax=unknown RepID=UPI0002339ECC | SoyBase | E_val: 0 | ISS |
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Glyma03g38600 not represented in the dataset |
Glyma03g38600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g41190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g227100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g38600.1 sequence type=CDS gene model=Glyma03g38600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTGGCGCGAGCTTGGAAAGAAGAGAATATATATGAATTTTACTAGAGCTTTGTCGACAACACCATTTAGACATGTGGCAGGATCAAATTTTGCATCCATCTTTACTGTGCAATCTGTTTGTGCATCAGCAAGATGTGTGCCGGATTTCATCAACCTATCATCTCTGGGAGTGGCTGGTTTTGGCAGGGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCACAAGTCTGGGCGAGAAGTGATGGACCATTAGGTTTGCAGACCGCAAAGAGGATATATGTGAAAAGAGGTGGTAGAAACCAGCTACCTGCTGGAGCTCCTTATGCCCGTCGTAATGTCCCAGCTACCAAATGTAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAGATCAGTATCTTCTTTGCAGGATATCCTCACTAATGTTGGCGAAAAGGTTCAATCAGAGTTTGAGCTTCTCAGCATGGATATCGCTGAACTTGTGACAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCAGCTGAAGGTGCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGCCATGTTGATCATGGCAAAACTTCTCTTCTTGATGCCTTGCGTCAAACTTCAGTGGCAGCCAAGGAGGCTGGTGGCATAACTCAACATATAGGTGCTTTTGTGGTGGTCATGCCGTCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAACAAATGTGATAAACCAGGTGCAAATTCTGAAAAAGTTAAAATGCAGCTTGCTTCAGAGGGCTTGCTTCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTCGAGGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAAGAAGCTTTACTACTTCAGGCTGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTCGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATATGGCAGGGAAGTTAACTCGACGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAGGAGAACAGGCTTAGGAATAAGATGATACAGGACAAGCCAACTACTTCAGATGATTCCAAGGAGGTTCCGCAGTGGGTTGAAATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTCACTGATGCATTGAAAACTTTAAATAGTGCTCAGGTTTTCGTAAATGTTGTCCATGTTGGCGCTGGGCCTATTTCTCAATCTGATCTAGACTTAGCACAAGCTTGTGGTGCTTGCATAGTTGGATTCAATGTAAAAAGTCCACCTACTGCTCTTAGTCAGGAAGCAGCTCGTGCCGGTATCAAGATAGTTCTGCACCGTGTAATTTACCACCTCTTGGAAGACATAGGCAATTTGATAATAGAGAGGGCCCCTGGGACTTCTGAAACCCATGTTGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAATCAAAGGGAGCAAGTCCAAGGGGCCTGATGTTAAGATAGCGGGTTGTCGTGTTATCGATGGTTCTGTGACAAGATCAGCAACCCTGAGGCTTCTTAGGAGTGGGGAAGTTGTGTTTGAAGGACTTTGTACATCGCTTAAGCGGGAGAAACAGGATGTGGATTCTGTGAAAAAGGGAACTGAGTGTGGAGTAGTAATCAATAATTGGTGTGATTTCCAGATTGGAGACGTTATTCAGTGCTTGGAACAGGTCATAAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATCGAGTGCTGA
>Glyma03g38600.1 sequence type=predicted peptide gene model=Glyma03g38600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAWRELGKKRIYMNFTRALSTTPFRHVAGSNFASIFTVQSVCASARCVPDFINLSSLGVAGFGRETKECGIRCFHASSQVWARSDGPLGLQTAKRIYVKRGGRNQLPAGAPYARRNVPATKCNPDKTIEIFEGMTLVELAKRTGRSVSSLQDILTNVGEKVQSEFELLSMDIAELVTMEAGINVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHIGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANSEKVKMQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMAGKLTRRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLRNKMIQDKPTTSDDSKEVPQWVEMPVIVKADVQGTVQAVTDALKTLNSAQVFVNVVHVGAGPISQSDLDLAQACGACIVGFNVKSPPTALSQEAARAGIKIVLHRVIYHLLEDIGNLIIERAPGTSETHVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGSVTRSATLRLLRSGEVVFEGLCTSLKREKQDVDSVKKGTECGVVINNWCDFQIGDVIQCLEQVIRKPKFIKSESGAVRIEC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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