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Report for Sequence Feature Glyma03g38391

Feature Type:gene_model
Chromosome:Gm03
Start:44733039
stop:44736014
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g38391
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09530AT Annotation by Michelle Graham. TAIR10: phytochrome interacting factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524 SoyBaseE_val: 1.00E-27ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009704GO-bp Annotation by Michelle Graham. GO Biological Process: de-etiolation SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010017GO-bp Annotation by Michelle Graham. GO Biological Process: red or far-red light signaling pathway SoyBaseN/AISS
GO:0031539GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of anthocyanin metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042802GO-mf Annotation by Michelle Graham. GO Molecular Function: identical protein binding SoyBaseN/AISS
KOG4304 KOG Transcriptional repressors of the hairy/E(spl) family (contains HLH) JGI ISS
PTHR12565Panther STEROL REGULATORY ELEMENT-BINDING PROTEIN JGI ISS
PTHR12565:SF7Panther CENTROMERE-BINDING PROTEIN 1, CBP-1 JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_G7KUN6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor SPATULA n=1 Tax=Medicago truncatula RepID=G7KUN6_MEDTR SoyBaseE_val: 2.00E-70ISS
UniRef100_UPI000233E741UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E741 related cluster n=1 Tax=unknown RepID=UPI000233E741 SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g38391
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g38391 not represented in the dataset
Glyma03g38391 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38391
ParalogEvidenceComments
Glyma19g40980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38391 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g225000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g38391
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g38391
>Glyma03g38391.1   sequence type=CDS   gene model=Glyma03g38391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCAGAAGATGTTTGACCCCAGCCGTTCTGGTATGACAAGAAGCTCCTCCCATGTAGCCTCCATTTATGACAATGATTTCCTTGAGTTGGTGTGGGAAAACGGTGAGGTTGTTGTACGAGGAGGTTCATCAAACAGATCACGAAAGACAAACGACGAAAGAATACATGAAGATGCCAGCATTAACAAAAGAACAAGGTTAAACCCATTATTATACTCACTTGAAGATCACTTTCCACCTCAAAGGGACTCTGACATGAGCACTTCACACCAAAGCAATGGCCAAGATTCGTGTGGTCAATCCTCCCAAAGCAAGCTTCATGAAGAATTTGCAAACTTACTTAAGCCCGTTAGCATAGGCAATAATCACTTACAACAGTGCTTACCTTCATCTCCGCTCAAGAAACAAAGAACAGTAGATTCAACTCAAACACCACCAACACCAAAAGTGAACTTCTCCAACTTTTCAATACCTGCAGTGTTTCTCAAATCTACTACTCATCAGGGAAACAGTGCAACCCAGCAGACAAACAATCATTCGTCTCCAGCAAGAATGGAGGAGATCATTGAAGCCCGCAAGGTTGAGCAATCAGTTAAAGAATCACATGGTTTTCAAAAGCAAACATCCTTAACTGTTGAAAGAAGCACCAAATTACCAACCCCACCGGTTGATGAACACTCTGAAGCTGTTGGTCATAACTGTGGTGTTCTTGGAATTCACAGATCCCAAGGTCAACTACGTTGTGACCAAACCTCAACTTCAGAAGCACTTATTAGAGCCAAGGCAAAAGCTTATAATAATAATGCTAACATGTGTCATGAACCGTTGCTAGCATCTTCTTCTGTGTGCTCGCTTGGAGCCTCCAACGACCCAAACCTTGGTCTCAGGAAACATGAGGACACTGAAACGTATTTAAGTGATAATGATGGAGAGCCTGAAGATATGGTAAAGCAAGATAGGGATGGTAACAGAGTCAGGAGAATCAGGAACCCTGTGGTTCATAACTTATCTGAAAAGAAGCGAAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCCAATTGCAATAAGGTGGACAAAGCATCAATGCTAGACGATGCCATCGACTATCTGAAGACCCTAAAGCTTCAGCTACAGATAATGTCAATGGGAAATGGGTTATGGCCACTTATGATGCTACCAGCTGCAACCACGGCGCATCACATGAATCCTCAGCTAGGAATGGGATTCAGGCCACCACAACTACCTATTCCACCATCACTTTCTGCTATCACAGACAACAGACTTCAGATGTTTGGTTGTTTCCCAAACCAAATACCACCCATGCCAGCAATGCCTCATGCACCTTTCTTCCCTATCATTGCAAATTCTGCCACACAACCACACTTGGCTAACACCACCAACTTGGCAGAACATTTGGCTGCATCTCTGCATGGAAATGCAACAAAGCTAGCGCCACCAAGTCAGGTTTCCTTTCAACAACACAGCTGCACTAGTACTCCTACACTATCTACCCCTTTCATTTTTCCACAAAAATAG
Predicted protein sequences of Glyma03g38391
>Glyma03g38391.1   sequence type=predicted peptide   gene model=Glyma03g38391   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIQKMFDPSRSGMTRSSSHVASIYDNDFLELVWENGEVVVRGGSSNRSRKTNDERIHEDASINKRTRLNPLLYSLEDHFPPQRDSDMSTSHQSNGQDSCGQSSQSKLHEEFANLLKPVSIGNNHLQQCLPSSPLKKQRTVDSTQTPPTPKVNFSNFSIPAVFLKSTTHQGNSATQQTNNHSSPARMEEIIEARKVEQSVKESHGFQKQTSLTVERSTKLPTPPVDEHSEAVGHNCGVLGIHRSQGQLRCDQTSTSEALIRAKAKAYNNNANMCHEPLLASSSVCSLGASNDPNLGLRKHEDTETYLSDNDGEPEDMVKQDRDGNRVRRIRNPVVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGNGLWPLMMLPAATTAHHMNPQLGMGFRPPQLPIPPSLSAITDNRLQMFGCFPNQIPPMPAMPHAPFFPIIANSATQPHLANTTNLAEHLAASLHGNATKLAPPSQVSFQQHSCTSTPTLSTPFIFPQK*






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