Report for Sequence Feature Glyma03g38310
Feature Type: gene_model
Chromosome: Gm03
Start: 44657532
stop: 44661475
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g38310
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G62140 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). | chr3:23007277-23008626 FORWARD LENGTH=214
SoyBase E_val: 9.00E-79 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG4036
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13495 Panther
NEFA-INTERACTING NUCLEAR PROTEIN NIP30
JGI ISS
PF10187 PFAM
N-terminal domain of NEFA-interacting nuclear protein NIP30
JGI ISS
UniRef100_B9RN44 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: NEFA-interacting nuclear protein NIP30, putative n=1 Tax=Ricinus communis RepID=B9RN44_RICCO
SoyBase E_val: 1.00E-91 ISS
UniRef100_I1JQX0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQX0_SOYBN
SoyBase E_val: 6.00E-149 ISS
Expression Patterns of Glyma03g38310
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g38310
Paralog Evidence Comments
Glyma19g40910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g38310 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g224200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g38310
Coding sequences of Glyma03g38310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g38310.1 sequence type=CDS gene model=Glyma03g38310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGAAGATTCGGATCGTCCTATCAGGATTATGAACTTCGTCTCCGAAGACCAATTGGTAGAAGCTAAAAAAACAAGAGGTGAACGTGTTGAAGACGGCACTGCCCAGAGGGATAGACCTCTCTACGAGATTCTAAAGGAGAATAAGGACAAAAAAGATGCGGAATTTAATGAAAGATTCAAGCACAGACCACCTAAAGCTTTAGATGAAGATGAGACCGAGTTTCTTGATAATTATGAAACAACAAGAAGGGAATATGAACGACAAGTGGCAGATGAGGAAGCCCTACAAATCCAAAGCTTTCAAGCAGCGGTGGAAGCACAGTCCAATGTCGTGCATGAAGTTAAGGAAAACCCCCCTTTACCTGTCGTCCAGGAACAAAAGTCTGCTGGAAAGAAGAATCCAGCCTCTCGCCCATTAGGCTTGATTATAAAAGTCAAGCCTCAAGCTAAAAAAACCAAGGTGAATCAAGGAAATGCTGAGGAAATTTCAAAAGCAGGAAACACTCCTGTGAATGATAGGAGTAAGTCTTTGGAGCCAGTACAGGCATTGAATGGCGAAGCTGATAAGTCCCAAGTTGCCCTAACTGGCCTTGTTTCGTACAGTGACGAAAGTGACGATGACTTGTAA
Predicted protein sequences of Glyma03g38310
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g38310.1 sequence type=predicted peptide gene model=Glyma03g38310 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDEDSDRPIRIMNFVSEDQLVEAKKTRGERVEDGTAQRDRPLYEILKENKDKKDAEFNERFKHRPPKALDEDETEFLDNYETTRREYERQVADEEALQIQSFQAAVEAQSNVVHEVKENPPLPVVQEQKSAGKKNPASRPLGLIIKVKPQAKKTKVNQGNAEEISKAGNTPVNDRSKSLEPVQALNGEADKSQVALTGLVSYSDESDDDL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
