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Report for Sequence Feature Glyma03g38251

Feature Type:gene_model
Chromosome:Gm03
Start:44624328
stop:44627131
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g38251
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75250AT Annotation by Michelle Graham. TAIR10: RAD-like 6 | chr1:28244463-28245453 REVERSE LENGTH=97 SoyBaseE_val: 3.00E-16ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF29Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G7KUL4UniRef Annotation by Michelle Graham. Most informative UniRef hit: DIV3B protein n=1 Tax=Medicago truncatula RepID=G7KUL4_MEDTR SoyBaseE_val: 1.00E-38ISS
UniRef100_UPI00023374B5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023374B5 related cluster n=1 Tax=unknown RepID=UPI00023374B5 SoyBaseE_val: 6.00E-62ISS

Expression Patterns of Glyma03g38251
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g38251 not represented in the dataset
Glyma03g38251 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38251
ParalogEvidenceComments
Glyma19g40860 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38251 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g223600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g38251
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g38251
>Glyma03g38251.1   sequence type=CDS   gene model=Glyma03g38251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATCACCTAATGTGAATGAATTACCAGGAAATCCTCAATTTCCTCAAAGTACCCTGAAGGGATCCATGGAAGATTTTGCTAAGAGTTTGAGTGGATGGAGTTGGGAGGAGAACAAATTGTTTGAGCTAGCTTTGGCAGTGGTGGATGAGCAACACCCTGAACGATGGGAAGTGGTTGCAGCCATGGTTGGAGGAGAAAAAAGTGCTGGAGATGTTCAAGAACATTATGTGATCCTTCTGGAGGATTTACTCGTTATAGAATCTGGAAAATTGGACCATACACTTGGAGAAGTTGTGCCTTTTGTCCTTGTTGAGTGTAAAGATTCCATATGCTTGTCCGACAATGATACAAGCATGTAA
Predicted protein sequences of Glyma03g38251
>Glyma03g38251.1   sequence type=predicted peptide   gene model=Glyma03g38251   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSPNVNELPGNPQFPQSTLKGSMEDFAKSLSGWSWEENKLFELALAVVDEQHPERWEVVAAMVGGEKSAGDVQEHYVILLEDLLVIESGKLDHTLGEVVPFVLVECKDSICLSDNDTSM*






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