SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g38230

Feature Type:gene_model
Chromosome:Gm03
Start:44616052
stop:44618115
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g38230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47030AT Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily | chr2:19324415-19326268 REVERSE LENGTH=588 SoyBaseE_val: 5.00E-137ISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0090406GO-cc Annotation by Michelle Graham. GO Cellular Compartment: pollen tube SoyBaseN/AISS
GO:0004857GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
PTHR22931Panther PHOSPHOENOLPYRUVATE DIKINASE-RELATED JGI ISS
PTHR22931:SF5Panther METHYLESTERASE INHIBITOR-RELATED JGI ISS
PF01095PFAM Pectinesterase JGI ISS
PF04043PFAM Plant invertase/pectin methylesterase inhibitor JGI ISS
UniRef100_I1JQW3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1JQW3_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI0002339D6EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339D6E related cluster n=1 Tax=unknown RepID=UPI0002339D6E SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g38230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38230
ParalogEvidenceComments
Glyma19g40840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g223400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g38230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g38230
>Glyma03g38230.2   sequence type=CDS   gene model=Glyma03g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGAAAGATCATTATCTCGGCTGTTTCTCTCATCCTGGTGGTGGGTGTGGCAATCGGCGTGGTGGTCGCCGTGAACAAGAAGGGCGAGGATCCTGCAGTTGAATCCCACCAAAAATACGTAGGGGTCATATGCCAAAACACCGATGAGAAAAAGCTCTGCCATGACACCCTGAGCTCCGTGAAGGGCATGGACAGCGCTGACCCCAAGGCCTACATCGCCACCGCTGTGAAAGCCACCATGGACAGCGTGACCAGGGCCTTCAACATGAGCGACAGGCTCACCACAGAGTACGGTGGCAGCGATAACGGAACCAAGATGGCCCTTGACGACTGCAAGGACCTCTTGCAATCAGCCATCGAGAGCCTCCAGCTCAGCACTGACATGGTTCACAACAACAACGTCCAGGCCGTGCATAACCAACAGGCTGATTTCAAGAACTGGCTCAGCGCTGTCATCTCTTACCAACAGGCCTGCACGGAGGGTTTTGACGATGCCAAAGACGGTGAGAAGAAGATCAAGGAGCAGTTGCAGACCCAGACCTTGGACAATGTTCAGAAACTCACTGGCATCACCCTTGACATTGTGAGTTCTTTGTCCCACATCCTCGAGCAGTTCGGCTTAAAGTTTAATCTTAAACCCGCATCTCGTCGTCTTCTCAGCGAGGATGGGTTCCCCACTTGGTTCTCTGCTGGTGATCGCAAGCTCTTGGCTCGTGGATGGAGAGCACGTATCAAGCCCAATGTTGTGGTTGCCAAGGATGGCTCTGGTCAGTTCAATACCGTTGCTCAGGCTATTGCTTCATACCCTAAGAATAACCAGGGTAGGTACATTATCTACGTTAAGGCCGGTGTCTATGACGAGTACATCACCGTTCCCAAGACTGCAGTCAACATTCTCATGTACGGTGATGGCCCTGCTAAGACCATCATCACCGGTCGCAAGAACTACGTCGAAGGTGTCAAGACCATGCAAACTGCCACTTTCGCCAACACTGCCGAAGGCTTCATTGCCAAGGCAATGACATTCCAGAACACAGCCGGTGCTGAGGGCCACCAAGCCGTTGCATTCAGGAACCAAGGAGACAGATCAGCTCTGGTTGGTTGCCACATTTTGGGGTACCAAGACACCTTGTACGTCCAGACCAACAGGCAATTCTACCGCAACTGCGTGATCTCTGGCACAGTGGACTTCATCTTTGGCACCTCCCCCACCGTGATCCAGCACTCAGTGATCATCGTGAGGAAGCCCTTGGACAACCAGTTCAACACGATCACCGCCGACGGAACATCCATGAAGAACATGGATACAGGAATCGTGATCCAGGGTTGCAACATCATCCCAGAAGCCGAACTCTTCCCTACAAGATTCCAGGTGAAGTCATACCTTGGAAGGCCATGGAAGCAATTCTCAAGGACAATTGTGATGGAATCCACCGTGGGTGACTTCCTTCACCCGGAAGGATGGTGCCCATGGGCCGGTGAACACTTCGAAGACACCCTGTACTATGCTGAATACAACAACGATGGACCTGGTGCCAACGTTAACGGAAGGATCAAGTGGAAGGGTTACCGCGGTCTCATTAGCCAGCAAGAAGCTGCTCAGTTCACCCCTGCCCAATTCCTCCAGGCTGGTTCCAACGGTGGAACTGACTGGTTGAAGGCTCTCCATGTTCCTCATGCACTTAACTTCATGAAAGCTTGA
Predicted protein sequences of Glyma03g38230
>Glyma03g38230.2   sequence type=predicted peptide   gene model=Glyma03g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGKIIISAVSLILVVGVAIGVVVAVNKKGEDPAVESHQKYVGVICQNTDEKKLCHDTLSSVKGMDSADPKAYIATAVKATMDSVTRAFNMSDRLTTEYGGSDNGTKMALDDCKDLLQSAIESLQLSTDMVHNNNVQAVHNQQADFKNWLSAVISYQQACTEGFDDAKDGEKKIKEQLQTQTLDNVQKLTGITLDIVSSLSHILEQFGLKFNLKPASRRLLSEDGFPTWFSAGDRKLLARGWRARIKPNVVVAKDGSGQFNTVAQAIASYPKNNQGRYIIYVKAGVYDEYITVPKTAVNILMYGDGPAKTIITGRKNYVEGVKTMQTATFANTAEGFIAKAMTFQNTAGAEGHQAVAFRNQGDRSALVGCHILGYQDTLYVQTNRQFYRNCVISGTVDFIFGTSPTVIQHSVIIVRKPLDNQFNTITADGTSMKNMDTGIVIQGCNIIPEAELFPTRFQVKSYLGRPWKQFSRTIVMESTVGDFLHPEGWCPWAGEHFEDTLYYAEYNNDGPGANVNGRIKWKGYRGLISQQEAAQFTPAQFLQAGSNGGTDWLKALHVPHALNFMKA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo