Glyma03g38190 - SoyBase

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Report for Sequence Feature Glyma03g38190

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44586432
stop:	44589302
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g38190

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02500	AT	Annotation by Michelle Graham. TAIR10: S-adenosylmethionine synthetase 1 \| chr1:519037-520218 FORWARD LENGTH=393	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006556	GO-bp	Annotation by Michelle Graham. GO Biological Process: S-adenosylmethionine biosynthetic process	SoyBase	N/A	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004478	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methionine adenosyltransferase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1506	KOG	S-adenosylmethionine synthetase	JGI		ISS
PTHR11964	Panther	S-ADENOSYLMETHIONINE SYNTHETASE	JGI		ISS
PF00438	PFAM	S-adenosylmethionine synthetase, N-terminal domain	JGI		ISS
PF02772	PFAM	S-adenosylmethionine synthetase, central domain	JGI		ISS
PF02773	PFAM	S-adenosylmethionine synthetase, C-terminal domain	JGI		ISS
UniRef100_I1JQV8	UniRef	Annotation by Michelle Graham. Best UniRef hit: S-adenosylmethionine synthase n=1 Tax=Glycine max RepID=I1JQV8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JQV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine synthase n=1 Tax=Glycine max RepID=I1JQV8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g38190

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g38190 not represented in the dataset	Glyma03g38190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g38190

Paralog	Evidence	Comments
Glyma19g40810	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g38190 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g223000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g38190

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g38190

Limit To All Plant Sequences

>Glyma03g38190.4   sequence type=transcript   gene model=Glyma03g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAACAAATGATAATGGGATCTACCTGTAACGTATTGTGCTACCGACACGGATACGTTCTCGGTTAGGGTTGGTGGGTGACTGGCAGTATATCCAGTTACAGAAGCACTCTCTTGCAAATCGCAGTCTCACCGACTCCTTTGAAATCTAACGGCGACACCTCAGGTTCCGGTGTCCGGTCATGTGGGGATTGATGACTATAAATAGCGAGACAGCGTCCTTTGCTGATTCCCACATCACAGCAAAGGAGTGATTTGGAGTTTGGAGCGACTGAACTAATCATTAATTTGCACTCGCTGTTTCAGCTTCATCACCCTTCTTTTGCATCATTTATATCTTGTTGATGCCTCATGCCGGATGTGATTCTGTTCATTTGGATTTTTTGCTTGTTGAACTCTAGCATTGTCTTGAGAAATGGCACAAGAAACCTTTCTATTCACATCTGAATCTGTAAACGAGGGTCACCCCGACAAGCTGTGCGACCAGATCTCTGATGCAGTACTTGATGCGTGCCTTGAACAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGAGAGATCACAACCAAGGCCAACGTAGACTATGAAAAGATTGTCCGCGACACATGCCGCGAAATTGGATTCATCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAGGTGTTGGTCAACATTGAGCAACAGAGCCCGGATATCGCCCAGGGTGTGCACGGCCACTTCACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGGTATGCCACCGATGAAACCCCCGAGTACATGCCCCTCAGCCATGTCCTTGCAACCAAACTTGGTGCTCGCCTCACAGAGGTTAGGAAGAATGGCACCTGTGCTTGGTTGAGGCCAGATGGTAAGACACAAGTAACCGTCGAGTACTACAATGACAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTCCTAATTTCCACCCAACATGATGAGACTGTGAGCAATGATCAAATTGCTGCGGACCTTAAAGAGCATGTTATCAAGCCTGTCATTCCTGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAACCCTTCTGGCCGTTTTGTCATTGGTGGCCCTCATGGTGATGCTGGTCTCACTGGAAGAAAGATCATCATTGATACCTATGGTGGCTGGGGTGCTCATGGTGGAGGTGCCTTTTCAGGGAAGGACCCTACCAAGGTTGACAGAAGTGGTGCCTATATTGTAAGGCAGGCTGCAAAGAGTGTCGTGGCAAATGGCCTTGCTAGAAGGTGCATTGTGCAAGTTTCCTATGCCATTGGTGTCCCTGAGCCCTTGTCAGTGTTTGTGGACACTTATGGAACTGGGAAGATTCCTGACAAGGAGATTCTGCAAATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGTCATAGGTTCCTCAAGACAGCTGCTTATGGACACTTTGGAAGGGATGATGCAGACTTCACCTGGGAAGTTGTGAAGCCACTCAAGTCAGAGAAGCCTCAAGCTTAAGAGTGTTGTTAAGTTAATCACTCCCTTCAGTGGATGTCTTGCTGGGTGTGGATGAATAATTTGCGTGTTTCATGACTACTACTACTACTACTCCATTCAATGTCTAATGCCATCTCATCAATACCTAAACTGTTCGTTTTTTTTTTTCTCCCTATACTCACAATTTATTGTTTGGCTATGCAATGTTACTGTGTTGATGCAATGGAAATTTTATCAGAATTTTGTCCCAATTGATTGCATTTTGAAAGGGTGAAAAAGACCTCCTCAATGTATTTTTATCTAAATGCAAGTATATTCTTTCACGAAATTGAAAATTTGTTTCCTTTGAACACAAGCAATTTGACTT

Coding sequences of Glyma03g38190

Limit To All Plant Sequences

>Glyma03g38190.3   sequence type=CDS   gene model=Glyma03g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAAGAAACCTTTCTATTCACATCTGAATCTGTAAACGAGGGTCACCCCGACAAGCTGTGCGACCAGATCTCTGATGCAGTACTTGATGCGTGCCTTGAACAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGAGAGATCACAACCAAGGCCAACGTAGACTATGAAAAGATTGTCCGCGACACATGCCGCGAAATTGGATTCATCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAGGTGTTGGTCAACATTGAGCAACAGAGCCCGGATATCGCCCAGGGTGTGCACGGCCACTTCACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGGTATGCCACCGATGAAACCCCCGAGTACATGCCCCTCAGCCATGTCCTTGCAACCAAACTTGGTGCTCGCCTCACAGAGGTTAGGAAGAATGGCACCTGTGCTTGGTTGAGGCCAGATGGTAAGACACAAGTAACCGTCGAGTACTACAATGACAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTCCTAATTTCCACCCAACATGATGAGACTGTGAGCAATGATCAAATTGCTGCGGACCTTAAAGAGCATGTTATCAAGCCTGTCATTCCTGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAACCCTTCTGGCCGTTTTGTCATTGGTGGCCCTCATGGTGATGCTGGTCTCACTGGAAGAAAGATCATCATTGATACCTATGGTGGCTGGGGTGCTCATGGTGGAGGTGCCTTTTCAGGGAAGGACCCTACCAAGGTTGACAGAAGTGGTGCCTATATTGTAAGGCAGGCTGCAAAGAGTGTCGTGGCAAATGGCCTTGCTAGAAGGTGCATTGTGCAAGTTTCCTATGCCATTGGTGTCCCTGAGCCCTTGTCAGTGTTTGTGGACACTTATGGAACTGGGAAGATTCCTGACAAGGAGATTCTGCAAATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGTCATAGGTTCCTCAAGACAGCTGCTTATGGACACTTTGGAAGGGATGATGCAGACTTCACCTGGGAAGTTGTGAAGCCACTCAAGTCAGAGAAGCCTCAAGCTTAA

>Glyma03g38190.4   sequence type=CDS   gene model=Glyma03g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACAAGAAACCTTTCTATTCACATCTGAATCTGTAAACGAGGGTCACCCCGACAAGCTGTGCGACCAGATCTCTGATGCAGTACTTGATGCGTGCCTTGAACAGGACCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTCGGAGAGATCACAACCAAGGCCAACGTAGACTATGAAAAGATTGTCCGCGACACATGCCGCGAAATTGGATTCATCTCTGATGATGTTGGTCTTGATGCTGACAAATGCAAGGTGTTGGTCAACATTGAGCAACAGAGCCCGGATATCGCCCAGGGTGTGCACGGCCACTTCACCAAGCGCCCAGAGGAGGTTGGTGCTGGTGACCAGGGTCACATGTTTGGGTATGCCACCGATGAAACCCCCGAGTACATGCCCCTCAGCCATGTCCTTGCAACCAAACTTGGTGCTCGCCTCACAGAGGTTAGGAAGAATGGCACCTGTGCTTGGTTGAGGCCAGATGGTAAGACACAAGTAACCGTCGAGTACTACAATGACAATGGTGCCATGGTTCCAGTTCGTGTCCACACTGTCCTAATTTCCACCCAACATGATGAGACTGTGAGCAATGATCAAATTGCTGCGGACCTTAAAGAGCATGTTATCAAGCCTGTCATTCCTGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAACCCTTCTGGCCGTTTTGTCATTGGTGGCCCTCATGGTGATGCTGGTCTCACTGGAAGAAAGATCATCATTGATACCTATGGTGGCTGGGGTGCTCATGGTGGAGGTGCCTTTTCAGGGAAGGACCCTACCAAGGTTGACAGAAGTGGTGCCTATATTGTAAGGCAGGCTGCAAAGAGTGTCGTGGCAAATGGCCTTGCTAGAAGGTGCATTGTGCAAGTTTCCTATGCCATTGGTGTCCCTGAGCCCTTGTCAGTGTTTGTGGACACTTATGGAACTGGGAAGATTCCTGACAAGGAGATTCTGCAAATTGTGAAGGAGAATTTCGACTTCAGACCTGGAATGATCACCATTAACTTGGACCTTAAGAGGGGTGGTCATAGGTTCCTCAAGACAGCTGCTTATGGACACTTTGGAAGGGATGATGCAGACTTCACCTGGGAAGTTGTGAAGCCACTCAAGTCAGAGAAGCCTCAAGCTTAA

Predicted protein sequences of Glyma03g38190

Limit To All Plant Sequences

>Glyma03g38190.3   sequence type=predicted peptide   gene model=Glyma03g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCREIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKENFDFRPGMITINLDLKRGGHRFLKTAAYGHFGRDDADFTWEVVKPLKSEKPQA*

>Glyma03g38190.4   sequence type=predicted peptide   gene model=Glyma03g38190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCREIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVGAGDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVSNDQIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILQIVKENFDFRPGMITINLDLKRGGHRFLKTAAYGHFGRDDADFTWEVVKPLKSEKPQA*

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