Report for Sequence Feature Glyma03g38180
Feature Type: gene_model
Chromosome: Gm03
Start: 44577718
stop: 44582391
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g38180
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G62240 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:23033592-23036653 REVERSE LENGTH=812
SoyBase E_val: 0 ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG2231
KOG
Predicted E3 ubiquitin ligase
JGI ISS
PTHR22938 Panther
ZINC FINGER PROTEIN 598
JGI ISS
UniRef100_G7KTR7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: LIM domain and RING finger protein n=1 Tax=Medicago truncatula RepID=G7KTR7_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JQV7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQV7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g38180
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g38180
Paralog Evidence Comments
Glyma19g40790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g38180 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g222900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g38180
Coding sequences of Glyma03g38180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g38180.1 sequence type=CDS gene model=Glyma03g38180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATGACTGTTGTGCCGTTTGCGCTGAGCCTTTGGAATGGGTTGCGTACGGACCCTGTTTGCACCGGGAGGTGTGTTCCACGTGCGTCGCTCGTCTCCGTTTCATCTGCGACGATCGCCGTTGCTGCATCTGCAAGACCGAATGCAACCTCGTTTTCGTCACCAAGGCTCTAGGTGATTATACGAGGATGATCAATGATTTTTCGACCCTTCCTTTGGAGGCGAGGGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATGCATTTTTTGATGATGTGGACCATTACAGGATGATCAAGGCTATGTGCAGGCTTTCGTGCAATGTATGTGACAAGATTGAGGATCAACCACAGGATGCTGCTTCAAGGCGGCGAGCAAAGTTTAGGAATATAGGGCAGTTGAAGGGTCATTTATTCCACCGTCATAAGTTGCATATGTGCAATTTGTGTTTAGAAGGAAGGAAGGTTTTTATATGTGAGCAAAAACTATATACCAAAGCACAGTTGAATCAACACGTAATCTCAGGTGATTCTGAGGTGGATGGAAGTGAGAGTGAGAGAGGCGGTTTCATGGGGCATCCCATGTGTGAATTCTGCAGAACCCCATTTTATGGAGACAATGAATTATACATGCATATGTCTACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGGCAGTATGAGTACTATAAGAATTATGATGACCTAGAGATTCACTTCCGTCAAGAGCACTTCTTATGTGAAGATGAGGCTTGCCTGGCTAAGAAATTTGTTGTTTTTCAATCTGAAGCAGAGATGAAGAGGCATAATGCTATTGAACATGGAGGGCGGATGTCACGGTCTAAGCGTAATGCTGCTCTTCAGATACCAACAAGCTTCCGATACAGACATGGTAATGAACATGAGCAACGCCGCGGAAGAGGTCGTACGTTTCGTCGTGATACTGAAAATCAACTTTCTATGGCCATTGAAGCTAGTTTGGAAACAGCTAATGCAGAGCAAACATTTCTTGATCAATCGACATCAAGTAGTGGGCAAGTTGCCGTTGATGATGGGAATGATGATATTGATGCTCTCATTCAGCCATTTGAATCATTAGCTGCAGGTTCTGAAGCATCTGCAAGATACCTTCAAGCCTTGGGGCATAGCTCTAGGAATGGACCTCTGGAAGATTCTTCCTTTCCACCACTACCCATAATTTCCAGCAATGGCCAACAAAGGTCCAAACATGAACTGGAAGGTTCATCTAGTAACACTATGGCTGCACGTCTGCGTCGGCATGGCAACAGAACTGTATCCGTTATCAATTCTGGTAATGCTTGGCCAGCAGCAGGTCGTGGACTGGTACAGTCATCAAGTAATCCTTCACAATCTAAACTTTCAACAAATAATGTCCTTGGACTGTCTCGTAACACTGGGCAGATGAAAACAGTAATTAACAGTGGACCGTCATCATCAACTTATGCTGGTTCTATTCAGGCTACACAGAGAACTGCTCATGGACAATTTCCTGCTGGTTCATCGAGGAACACACGTGACAATGTAAGAATTGTTCACTCTGCATCTGCTCCAAATCTCATGGAGAACAATTCTGTTGAAGTTTCAATTTCTGATTTTCCTCCAGTTTCTGCTGCACAAGTAAGTAAGTTACCTGCCAGCAGCCAGTCTTCATTGAATGTGGAAAATGTTCAATCCGCTAACAAGTCTTTGGTTGAAAAGATTCGTGGTGCTCTTGATTTTGATGAAGAAAGATACAGTATATTTAAAGACATATCTGCCCAATATCGCCAAGGCACAATAGATACAGGTACATATCTGGACTATGTACAGCAGTTTGGCTTGTCTCATCTTGTTCTTGAGTTGGCAAGACTATGCCCGGATACTCACAAACAGAAAGAGCTTGTTGAGGCTTACAACGCAAGTTTGCAAAGAGATGCTTTCCCAGAAATTAACTTGGTTCGAGGCAGCACTAGCACCCATTCCAAAGACAGTAACGTAAACAAGAAAGGTAAAGGTAAGTCTGTAGATAGTAGGGGGAGTAACTCCAGAGAGAAATTAGCAAATAACTTTTTAAGCACTGTACATCAGCTACAGGCAAATTATAAATCTTCAGAAGAGAAAGCGGAGGTGCTATCAAGGGGTGATTACCGCAGTGAAGGAGGCAAATTAAAAATTGAGCAGCGGATTGATATGAATTCTGGTAGTCAACCTACGATGAAGCTTGGTGGGAAGACTGAAACATCAAACGACAGTTTATCTAATCAAAGTAAAGACGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAACTTCTAAGTTCCTGAGAGTACGCCTTGGTGATGGTTCTGTTTCAGCCCTTCTTGATCAATCAGATCCTGGAACAACAGACGGCTCAGAAGGTAACAAGGATGACTCTGGAGGAGGGCCTCCTGTGCGAGGTGTTTGGCGAAAAGGGGGAGGTAATAAACTATTTTCCTAG
Predicted protein sequences of Glyma03g38180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g38180.1 sequence type=predicted peptide gene model=Glyma03g38180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLVFVTKALGDYTRMINDFSTLPLEAREGKVGSYWYHEDTNAFFDDVDHYRMIKAMCRLSCNVCDKIEDQPQDAASRRRAKFRNIGQLKGHLFHRHKLHMCNLCLEGRKVFICEQKLYTKAQLNQHVISGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQEHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRHGNEHEQRRGRGRTFRRDTENQLSMAIEASLETANAEQTFLDQSTSSSGQVAVDDGNDDIDALIQPFESLAAGSEASARYLQALGHSSRNGPLEDSSFPPLPIISSNGQQRSKHELEGSSSNTMAARLRRHGNRTVSVINSGNAWPAAGRGLVQSSSNPSQSKLSTNNVLGLSRNTGQMKTVINSGPSSSTYAGSIQATQRTAHGQFPAGSSRNTRDNVRIVHSASAPNLMENNSVEVSISDFPPVSAAQVSKLPASSQSSLNVENVQSANKSLVEKIRGALDFDEERYSIFKDISAQYRQGTIDTGTYLDYVQQFGLSHLVLELARLCPDTHKQKELVEAYNASLQRDAFPEINLVRGSTSTHSKDSNVNKKGKGKSVDSRGSNSREKLANNFLSTVHQLQANYKSSEEKAEVLSRGDYRSEGGKLKIEQRIDMNSGSQPTMKLGGKTETSNDSLSNQSKDDGGGGNKQRKKTSKFLRVRLGDGSVSALLDQSDPGTTDGSEGNKDDSGGGPPVRGVWRKGGGNKLFS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
