SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62330 | AT | Annotation by Michelle Graham. TAIR10: Zinc knuckle (CCHC-type) family protein | chr3:23063329-23065419 REVERSE LENGTH=479 | SoyBase | E_val: 5.00E-154 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| UniRef100_B9RNB0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNB0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339D62 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339D62 related cluster n=1 Tax=unknown RepID=UPI0002339D62 | SoyBase | E_val: 0 | ISS |
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Glyma03g37960 not represented in the dataset |
Glyma03g37960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g40580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g221000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37960.2 sequence type=transcript gene model=Glyma03g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCGGACTTGGGCAAGGCAACCCTAGGTAGAAAAATGTAGGTATGTTGTTGTGTTGTTTGGTGATTTGTGGAAACGTAATCAACATTTCGCAGTGTGGAGGATCGTCTTCTTCATCCCTCCCACACCGAGTTCAGTTCAGTTAGGGTATCTATTTTTTAATGGCTAATAGATCCGATCCGGATATTGATGATGATTTTCTTGAGCTTTATAAGGAGTACACTGGCCCCCTGGGGTCTGCTACTACAAACACGCAAGAGAGGGCAAAATCAAATAAGAGGTCTAATGCAGGGTCTGATGAGGAGGAGGAAGCCCGGGACCCTAATGCTGTTCCAACCGATTTCACCAGCCGAGAAGCTAAGGTTTGGGAGGCTAAGTCAAAGGCTACGGAAAGGAATTGGAAGAAAAGGAAAGAGGAGGAAATGATCTGCAAGCTTTGTGGAGAATCAGGGCATTTCACTCAGGGCTGCCCATCTACTCTTGGAGCAAATCGCAAGTCTCAAGATTTCTTTGAAAGGATACCAGCCAGAGACAAAAATGTGCGGGCACTTTTCACGGAGAAAGTTTTAAGCAAGATTGAAAAGGATGTTGGCTGCAAAATTAAGATGGATGAGAAGTTTATTATTGTCAGTGGTAAGGATAGATTAATTTTGGCCAAAGGTGTTGATTCTGTGCACAAGATTCGAGAGGAGGGTGATCAAAGGGGAACATCTAGTTCTCAAATGACCCGATCAAGATCACCTGAAAGAAGTCCTGTTAGTGCTCGGTTTCAACGCTCTGAGCCCCAAAGGTCTCATTCTGGACCTCGAAATACATCTCAGTTTCAACAAAGATTTGGTAGGCAAGAGCGGGCGGTTGAAGACCGTATCCGGGATGACGTGCAAAAGTTTTCTAGAGGTTCTCCACAAGCAAGAGCTTATGGAAATAGTGGAGCTAGAGGTCGTTCAAGCCAGTCAAGATCTCCAAGACATGCCCCTTATACAGGAAACTCATATAACTCATTTGAGGGTCGTAATCAAAACATGGGTGCTTATAGGAATGATGGGTGGGATTCTCATAGAAGAGAATCTGGTATCCGGCCTGGTCATCAGTTTGATTACAGCGCCTCCCCACAGACTTTAGAAGAATTAGAGTTGGAGTACAAGAATGAGGCAGCAGAGCTAATGAAAATCCGTGACAGAGAAGAAGATGAAGAAAATTTCAAGCATCGTGAGGCTATTAGAGATTTGAGGGAGAAGTACATGAGCAAAGTTTCCTTGGTAAGGGACACACATGCAAAACAGTGGGAAGGATTTCTTCAGCTTGATGCGCAGAGGCGTCAACAGCAGGCAGTTCAACAGATGCCTTCTGGTTATCGGGGTTTTAAACAGCAGAGCTTTCCTGAATATGATGGATCCACTGCCAATCCTCCTCCTTATGCTGGTTCTAATCTACCATTGGAATCGAGGAACAGGTTCTCAGACAACATGGAAACTTATCCTAATAGGCCTCATGATAATTTTGGTGAATTTCATAGGCGTGGAGATTTCGCAAAAGCTTACAACAGATATTAAAATTCTATATATCAATTGAGTGGGTCCAGATTGATCGAGTAGGCTGTTTAATGCACTGGAGGCCGTAAGGGTAGGTAAGTATGTTGATTAATCTTAGGATTGGGATGGACATGCATTTCGGTTGGCGGGTCCGGTTTTCCTTTGAAATATAGTTGCTCAGTCGTGTTAAGAACTTTGCTGCAAGTTGTGATACATTATTGGGTTATTATGTTTGACTGGTAACGTGCTACTGCAGCTTGGATTGTGTTATGAGGAGATCCCTTGAAAGATTGATTGCTTTTAGCAGAATCAAATTTACGTTTTGTTACCACGCAGGTGTTTTATGTACCCTATAGGGTGCTTATGATTTATTTACTTGCTATAAATTTCTTGAGGGGGTGGTCTGGTTAGTATCTTTAACACTTTTCTGAATGATTTACCTACAACGAAATGGTTTTACGATAATGAATGTTATCGGATGTGCTTATTTTCAGTTGCCAGTTTGGCATAAAAGTCATGTATTGGTGATAAGTGAAGGGTTTTCGAAGATGTTTAGCTTAAACAATCACCATTTATTTGATCTCTATGACTTT
>Glyma03g37960.1 sequence type=CDS gene model=Glyma03g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAATAGATCCGATCCGGATATTGATGATGATTTTCTTGAGCTTTATAAGGAGTACACTGGCCCCCTGGGGTCTGCTACTACAAACACGCAAGAGAGGGCAAAATCAAATAAGAGGTCTAATGCAGGGTCTGATGAGGAGGAGGAAGCCCGGGACCCTAATGCTGTTCCAACCGATTTCACCAGCCGAGAAGCTAAGGTTTGGGAGGCTAAGTCAAAGGCTACGGAAAGGAATTGGAAGAAAAGGAAAGAGGAGGAAATGATCTGCAAGCTTTGTGGAGAATCAGGGCATTTCACTCAGGGCTGCCCATCTACTCTTGGAGCAAATCGCAAGTCTCAAGATTTCTTTGAAAGGATACCAGCCAGAGACAAAAATGTGCGGGCACTTTTCACGGAGAAAGTTTTAAGCAAGATTGAAAAGGATGTTGGCTGCAAAATTAAGATGGATGAGAAGTTTATTATTGTCAGTGGTAAGGATAGATTAATTTTGGCCAAAGGTGTTGATTCTGTGCACAAGATTCGAGAGGAGGGTGATCAAAGGGGAACATCTAGTTCTCAAATGACCCGATCAAGATCACCTGAAAGAAGTCCTGTTAGTGCTCGGTTTCAACGCTCTGAGCCCCAAAGGTCTCATTCTGGACCTCGAAATACATCTCAGTTTCAACAAAGATTTGGTAGGCAAGAGCGGGCGGTTGAAGACCGTATCCGGGATGACGTGCAAAAGTTTTCTAGAGGTTCTCCACAAGCTTATGGAAATAGTGGAGCTAGAGGTCGTTCAAGCCAGTCAAGATCTCCAAGACATGCCCCTTATACAGGAAACTCATATAACTCATTTGAGGGTCGTAATCAAAACATGGGTGCTTATAGGAATGATGGGTGGGATTCTCATAGAAGAGAATCTGGTATCCGGCCTGGTCATCAGTTTGATTACAGCGCCTCCCCACAGACTTTAGAAGAATTAGAGTTGGAGTACAAGAATGAGGCAGCAGAGCTAATGAAAATCCGTGACAGAGAAGAAGATGAAGAAAATTTCAAGCATCGTGAGGCTATTAGAGATTTGAGGGAGAAGTACATGAGCAAAGTTTCCTTGGTAAGGGACACACATGCAAAACAGTGGGAAGGATTTCTTCAGCTTGATGCGCAGAGGCGTCAACAGCAGGCAGTTCAACAGATGCCTTCTGGTTATCGGGGTTTTAAACAGCAGAGCTTTCCTGAATATGATGGATCCACTGCCAATCCTCCTCCTTATGCTGGTTCTAATCTACCATTGGAATCGAGGAACAGGTTCTCAGACAACATGGAAACTTATCCTAATAGGCCTCATGATAATTTTGGTGAATTTCATAGGCGTGGAGATTTCGCAAAAGCTTACAACAGATATTAA >Glyma03g37960.2 sequence type=CDS gene model=Glyma03g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAATAGATCCGATCCGGATATTGATGATGATTTTCTTGAGCTTTATAAGGAGTACACTGGCCCCCTGGGGTCTGCTACTACAAACACGCAAGAGAGGGCAAAATCAAATAAGAGGTCTAATGCAGGGTCTGATGAGGAGGAGGAAGCCCGGGACCCTAATGCTGTTCCAACCGATTTCACCAGCCGAGAAGCTAAGGTTTGGGAGGCTAAGTCAAAGGCTACGGAAAGGAATTGGAAGAAAAGGAAAGAGGAGGAAATGATCTGCAAGCTTTGTGGAGAATCAGGGCATTTCACTCAGGGCTGCCCATCTACTCTTGGAGCAAATCGCAAGTCTCAAGATTTCTTTGAAAGGATACCAGCCAGAGACAAAAATGTGCGGGCACTTTTCACGGAGAAAGTTTTAAGCAAGATTGAAAAGGATGTTGGCTGCAAAATTAAGATGGATGAGAAGTTTATTATTGTCAGTGGTAAGGATAGATTAATTTTGGCCAAAGGTGTTGATTCTGTGCACAAGATTCGAGAGGAGGGTGATCAAAGGGGAACATCTAGTTCTCAAATGACCCGATCAAGATCACCTGAAAGAAGTCCTGTTAGTGCTCGGTTTCAACGCTCTGAGCCCCAAAGGTCTCATTCTGGACCTCGAAATACATCTCAGTTTCAACAAAGATTTGGTAGGCAAGAGCGGGCGGTTGAAGACCGTATCCGGGATGACGTGCAAAAGTTTTCTAGAGGTTCTCCACAAGCAAGAGCTTATGGAAATAGTGGAGCTAGAGGTCGTTCAAGCCAGTCAAGATCTCCAAGACATGCCCCTTATACAGGAAACTCATATAACTCATTTGAGGGTCGTAATCAAAACATGGGTGCTTATAGGAATGATGGGTGGGATTCTCATAGAAGAGAATCTGGTATCCGGCCTGGTCATCAGTTTGATTACAGCGCCTCCCCACAGACTTTAGAAGAATTAGAGTTGGAGTACAAGAATGAGGCAGCAGAGCTAATGAAAATCCGTGACAGAGAAGAAGATGAAGAAAATTTCAAGCATCGTGAGGCTATTAGAGATTTGAGGGAGAAGTACATGAGCAAAGTTTCCTTGGTAAGGGACACACATGCAAAACAGTGGGAAGGATTTCTTCAGCTTGATGCGCAGAGGCGTCAACAGCAGGCAGTTCAACAGATGCCTTCTGGTTATCGGGGTTTTAAACAGCAGAGCTTTCCTGAATATGATGGATCCACTGCCAATCCTCCTCCTTATGCTGGTTCTAATCTACCATTGGAATCGAGGAACAGGTTCTCAGACAACATGGAAACTTATCCTAATAGGCCTCATGATAATTTTGGTGAATTTCATAGGCGTGGAGATTTCGCAAAAGCTTACAACAGATATTAA
>Glyma03g37960.1 sequence type=predicted peptide gene model=Glyma03g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANRSDPDIDDDFLELYKEYTGPLGSATTNTQERAKSNKRSNAGSDEEEEARDPNAVPTDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVRALFTEKVLSKIEKDVGCKIKMDEKFIIVSGKDRLILAKGVDSVHKIREEGDQRGTSSSQMTRSRSPERSPVSARFQRSEPQRSHSGPRNTSQFQQRFGRQERAVEDRIRDDVQKFSRGSPQAYGNSGARGRSSQSRSPRHAPYTGNSYNSFEGRNQNMGAYRNDGWDSHRRESGIRPGHQFDYSASPQTLEELELEYKNEAAELMKIRDREEDEENFKHREAIRDLREKYMSKVSLVRDTHAKQWEGFLQLDAQRRQQQAVQQMPSGYRGFKQQSFPEYDGSTANPPPYAGSNLPLESRNRFSDNMETYPNRPHDNFGEFHRRGDFAKAYNRY* >Glyma03g37960.2 sequence type=predicted peptide gene model=Glyma03g37960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANRSDPDIDDDFLELYKEYTGPLGSATTNTQERAKSNKRSNAGSDEEEEARDPNAVPTDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFERIPARDKNVRALFTEKVLSKIEKDVGCKIKMDEKFIIVSGKDRLILAKGVDSVHKIREEGDQRGTSSSQMTRSRSPERSPVSARFQRSEPQRSHSGPRNTSQFQQRFGRQERAVEDRIRDDVQKFSRGSPQARAYGNSGARGRSSQSRSPRHAPYTGNSYNSFEGRNQNMGAYRNDGWDSHRRESGIRPGHQFDYSASPQTLEELELEYKNEAAELMKIRDREEDEENFKHREAIRDLREKYMSKVSLVRDTHAKQWEGFLQLDAQRRQQQAVQQMPSGYRGFKQQSFPEYDGSTANPPPYAGSNLPLESRNRFSDNMETYPNRPHDNFGEFHRRGDFAKAYNRY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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