Glyma03g37890 - SoyBase

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Report for Sequence Feature Glyma03g37890

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44348126
stop:	44352447
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47350	AT	Annotation by Michelle Graham. TAIR10: HIT zinc finger ;PAPA-1-like conserved region \| chr2:19434588-19437045 FORWARD LENGTH=486	SoyBase	E_val: 1.00E-119	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR21561	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR21561:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04438	PFAM	HIT zinc finger	JGI		ISS
PF04795	PFAM	PAPA-1-like conserved region	JGI		ISS
UniRef100_G7KSU6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: INO80 complex subunit B n=1 Tax=Medicago truncatula RepID=G7KSU6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023373BA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023373BA related cluster n=1 Tax=unknown RepID=UPI00023373BA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g37890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37890

Paralog	Evidence	Comments
Glyma19g40490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g220300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g37890

Limit To All Plant Sequences

>Glyma03g37890.2   sequence type=CDS   gene model=Glyma03g37890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATTTGGGAGGTACCCAGTTCGACGGCCTCAGCAATGCTGTGAGGAGGAAGAGGAGTCAGACTTCGCGCAGGCCTCGGCCTGATTCACAGCATGCTTCTGAAGGTCAGGAACTGTCTCCCTTGTCGTCGACGCCTTCGGAGGATGCTGGCAAGGCCTCTAGTGATGAGAATGTTGGTTACGATGCGAATTCCAAGAGAAAGGAATTCAATCTTAACCATTGTGTCTCTCAAACCTCCTCTGGTACTGGAGCTGAAGACGAAAAATCCCATAAAAAGAGTAAAAAAGATGGAGGGTTCCATACATTTTATAGTAATGAGCCTGTACGGAGCGGTTCAAATAATAAACGCTGTAGTGAAGGGGTTCTTGCTCCAGCAAATTGGAAAGGTTCTAGCAAAACAAAGGATAGCTTGGATTCAGAGTTGAGAAATGCAGATTTGTATGGTGGAAGGAATCCTGAGAGCATGAGTCTGGCACAGTTTGGTGGCTCTCAGGATGGATTGGGGAATGAGAACCGAGTTAAAAAGGTTAAACTCAAGGTTGGCGGAGTGACACGTACTATTCAAGCCAATTCGGCAACCAATGGTGCTTCGGGAAGTGGAACAACAATGAAGTCTCGTTCATCAGATGCCTCCAGACCACGCCAAAAGCAACAGAGTAATTCAGACGATAATAACTCTCCTTCGGATAAGAGGAGTCGTCTACAAGGTGTTCCGTGGAAGGATTTCTCGAGGGGTGGTTTTGGTCTTGGGAAGGAGGAATCATTGATGGGGAAGATTTCTGGAAAGAACACAACTAGTAAGCTGGGAGACAAGTCTGAACCAGTTCGTAAGAGCAAGCGAGTACCAAAGAGACGTGTACTTGATGGGGAATTTGGTGATGACGATGACGAGGATGATGAGATTCGGTACTTGGAAAAGCTGAAAACGTCAAAAGTTTCTGCAGTCTATAGAGATGAAGAAGAATTAAACAAGAAACATCGAAAGCTATCTAGTGTCTCTAATTTGGAAAATGCTGCCCCAAGGTCAGGCAAAGACGGTAAGAAAAGGTCTAGATCTGATAGAGTGTATGAGGACACAGATTATGAGGATGAAGACGAGTCAGGGTCTGATGGTGAGCTTGAGGATAAGAAAAAGAAAAAACAGAGGAAGGAATCTGTTGATGTATTGATGGACAGTAAGAGGGAAATGACTCTTACGACTCGTCAACGGGCCCTTCAATCAAGTAAAGATGCCTCTGCATCTAGTGCTAGTGTAATTGAGTTTCCCAACGGATTACCACCTGCCCCGCCTAGAAAACAAAAGGAGAAGCTTTCAGAGGTCGACCAGCAACTGAAGAAAGCTGAGGCTGCGCAGAGGCGTAGAATGCAAGTTGAGAAGGCTGCCAGGGAATCTGAGGCTGAAGCTATCAGGAAAATACTTGGTCAAGACTCCAGTAGGAAAAAGCGAGAAGAGAAAATAAAGAAGCGCCAGGAAGAACTGGCACAGGAAAGGGCAGCCAATGCACTAATGCTTGCATCAAATACCATCAGATACACAATGGGTCCGACTGGAACGTTTGTGACTTTTTCTGAGGAAATGGGGCTTCCTAGCATATTGAACTCCAAACCTGTCAGTTATCCCCCACCTCGTGAGAAGTGTGCTGGTCCATCTTGTACAAATCCTTATAAGTATCGGGATTCAAAATCAAAGCTTCCTCTTTGCAGTCTCCAATGCTACAAGGCTGTCCAGGAGAAGGTGGTGGCTGAAACTACCTGTTGA

Predicted protein sequences of Glyma03g37890

Limit To All Plant Sequences

>Glyma03g37890.2   sequence type=predicted peptide   gene model=Glyma03g37890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDLGGTQFDGLSNAVRRKRSQTSRRPRPDSQHASEGQELSPLSSTPSEDAGKASSDENVGYDANSKRKEFNLNHCVSQTSSGTGAEDEKSHKKSKKDGGFHTFYSNEPVRSGSNNKRCSEGVLAPANWKGSSKTKDSLDSELRNADLYGGRNPESMSLAQFGGSQDGLGNENRVKKVKLKVGGVTRTIQANSATNGASGSGTTMKSRSSDASRPRQKQQSNSDDNNSPSDKRSRLQGVPWKDFSRGGFGLGKEESLMGKISGKNTTSKLGDKSEPVRKSKRVPKRRVLDGEFGDDDDEDDEIRYLEKLKTSKVSAVYRDEEELNKKHRKLSSVSNLENAAPRSGKDGKKRSRSDRVYEDTDYEDEDESGSDGELEDKKKKKQRKESVDVLMDSKREMTLTTRQRALQSSKDASASSASVIEFPNGLPPAPPRKQKEKLSEVDQQLKKAEAAQRRRMQVEKAARESEAEAIRKILGQDSSRKKREEKIKKRQEELAQERAANALMLASNTIRYTMGPTGTFVTFSEEMGLPSILNSKPVSYPPPREKCAGPSCTNPYKYRDSKSKLPLCSLQCYKAVQEKVVAETTC*

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