SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G02580 | AT | Annotation by Michelle Graham. TAIR10: SET domain-containing protein | chr1:544796-548994 FORWARD LENGTH=689 | SoyBase | E_val: 2.00E-66 | ISS |
| GO:0006349 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression by genetic imprinting | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048317 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed morphogenesis | SoyBase | N/A | ISS |
| GO:2000014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of endosperm development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR22884 | Panther | SET DOMAIN PROTEINS | JGI | ISS | |
| PTHR22884:SF18 | Panther | ENHANCER OF ZESTE, EZH | JGI | ISS | |
| UniRef100_G7KSU0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: MEDEA n=1 Tax=Medicago truncatula RepID=G7KSU0_MEDTR | SoyBase | E_val: 6.00E-127 | ISS |
| UniRef100_UPI00023373B7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023373B7 related cluster n=1 Tax=unknown RepID=UPI00023373B7 | SoyBase | E_val: 0 | ISS |
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Glyma03g37841 not represented in the dataset |
Glyma03g37841 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g40430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g219800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37841.1 sequence type=CDS gene model=Glyma03g37841 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAACAAAACCACCAACTCTGCATCCAAACATCAAAAACAACATGGAGAGGCGACAAAAGATGCTGCTAGAAGAACCTTGAAGACCAAGATTAAACAGTTGACAAATCAAGTCCATGCGAAGCGAGAGAAATCAATTAAAGAGAAAGTTCAAAGGCATTCGGAAAATCTTAAGCCTTTGTTTTCAAAGGTCAACTCGATAATTTCAAGGAGGGGGACTTTGCAAAATAAGGAAAAGGTCAATATGCTTTCCTCAAGAATTAACAAGCCAATTTGCAAGCATAATGGTTTCCCTAAAGGTTTGGTAGGGAAAGATTGCATCAACAAATTGGATATTGCACTTGCAAATGAAATTAGGATTCCATACCTTGAAAAATTACCACCATATACAACTTGGGTGTATCTGACCAGAAATATAAGAATGGCTAAAGATCAATCTGTCATAGGAAAAAGACAGATTTACTACGACAAAATTGGTGGTGAAATAATGATATGCAGTGATAGTGAGGAAGAGATGGTAAATCTTAAAAATGACAAACATGACTTTACTGAGGCTGAAGACCTAATTTTGCGGATGACACTTGAGGAATATGAGTCTACTGAAGAGGTATTGATTATCGTTAAAGAGTTTGTTAAAACTACTGATTCACAAATTCAGGAAAGGTATGAAAAACTCAAGGAAAAGCATATGGGGAGTCTAGACAATCATTCTGAAGATTGTCATTGTAAAGGATGCAAGTGTCACCTTGAAATATGTTTGGAGAAAAGCTTGAGTGCTACTTTAGAATCTTTTGATAACCTTTTTTGTCGTCAGTGTCTGATCTTTGATTGTCCTATGCATGCCACTTCTCAACCTGTAATGTATCATAGTGAAAAGCAACAAGTGTGGTCAGAACATGAAGGTGATAGGCAACCATGTAGTGACCAATGCTACCTCTTGGATAAAAGAATCAATCCAATAGAAGGATGTCATGAATCTCTAAAAAGTCTTGTTGAACATACTTCAAAGAAATTAATAGTTTCTGGTAGCTTCGGCCACGGTGAGCGGGACAAGGGAGTTGTGGAAGGACAAAAAGATATCCAACTGTCCAATTCAACGAAAGTGCAAGCCAATGAGATGACAAATAACTCAGATTGGAAACATCTAGAGAAAGATTTATATTTGAAGGGAGTAGAATTGTTTGGAAAAAATAGTTGCCTTATAGCCCACAACTTGCTTCCTGGATTTAAGACTTGCTTAGAAGTAGCTAGGTACATGCTTGCTAGTGGAGAATCAATGCCTCATGAATCCATACCAAGTTCAATCACTAACAGAAATGATAAGATTAATGAAGATTGCATAGACCAAGAAATTCCATCAAGATCATCGCCACGAAAAAAGTTAAAAACTAGGAAGTTTAGTTTTTCTCAAAAATCTATTGCCCTCTCACCTAGATGGAAAAGAGTTGGTTATGGGAAAGACAATTGCAATAAGCAATATACTCCTTGTGGGTGTCAGGGAATATGCACACAAGAATGTTCTTGTCTTCGTAAGGGAACTTACTGTGAAAAATATTGTGGGTGTTCAAAGCTATGTGATAGTCGGTTCAAAGGATGCTATTGTGTTAAGGGTCAATGTAGAAGCGAACTATGCCTATGCTTTGCATCAAACCGTGAATGTGACCCAGATGTTTGTCAAAATTGTTGGGTTAGGTAA
>Glyma03g37841.1 sequence type=predicted peptide gene model=Glyma03g37841 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNKTTNSASKHQKQHGEATKDAARRTLKTKIKQLTNQVHAKREKSIKEKVQRHSENLKPLFSKVNSIISRRGTLQNKEKVNMLSSRINKPICKHNGFPKGLVGKDCINKLDIALANEIRIPYLEKLPPYTTWVYLTRNIRMAKDQSVIGKRQIYYDKIGGEIMICSDSEEEMVNLKNDKHDFTEAEDLILRMTLEEYESTEEVLIIVKEFVKTTDSQIQERYEKLKEKHMGSLDNHSEDCHCKGCKCHLEICLEKSLSATLESFDNLFCRQCLIFDCPMHATSQPVMYHSEKQQVWSEHEGDRQPCSDQCYLLDKRINPIEGCHESLKSLVEHTSKKLIVSGSFGHGERDKGVVEGQKDIQLSNSTKVQANEMTNNSDWKHLEKDLYLKGVELFGKNSCLIAHNLLPGFKTCLEVARYMLASGESMPHESIPSSITNRNDKINEDCIDQEIPSRSSPRKKLKTRKFSFSQKSIALSPRWKRVGYGKDNCNKQYTPCGCQGICTQECSCLRKGTYCEKYCGCSKLCDSRFKGCYCVKGQCRSELCLCFASNRECDPDVCQNCWVR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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