SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02070 | AT | Annotation by Michelle Graham. TAIR10: MUTS homolog 6 | chr4:906079-912930 FORWARD LENGTH=1321 | SoyBase | E_val: 0 | ISS |
| GO:0000710 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic mismatch repair | SoyBase | N/A | ISS |
| GO:0006200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP catabolic process | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0006270 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication initiation | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006290 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine dimer repair | SoyBase | N/A | ISS |
| GO:0006298 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mismatch repair | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009411 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV | SoyBase | N/A | ISS |
| GO:0043570 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of DNA repeat elements | SoyBase | N/A | ISS |
| GO:0045910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA recombination | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0000228 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0032301 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: MutSalpha complex | SoyBase | N/A | ISS |
| GO:0000400 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: four-way junction DNA binding | SoyBase | N/A | ISS |
| GO:0003684 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: damaged DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity | SoyBase | N/A | ISS |
| GO:0032137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: guanine/thymine mispair binding | SoyBase | N/A | ISS |
| GO:0032138 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: single base insertion or deletion binding | SoyBase | N/A | ISS |
| KOG0217 | KOG | Mismatch repair ATPase MSH6 (MutS family) | JGI | ISS | |
| PTHR11361 | Panther | DNA MISMATCH REPAIR MUTS RELATED PROTEINS | JGI | ISS | |
| PTHR11361:SF31 | Panther | MUTS HOMOLOG 6, MSH6 | JGI | ISS | |
| PF00488 | PFAM | MutS domain V | JGI | ISS | |
| PF01624 | PFAM | MutS domain I | JGI | ISS | |
| PF05188 | PFAM | MutS domain II | JGI | ISS | |
| PF05192 | PFAM | MutS domain III | JGI | ISS | |
| UniRef100_G7KST2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA mismatch repair protein Msh6-1 n=1 Tax=Medicago truncatula RepID=G7KST2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JQR4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JQR4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g37750 not represented in the dataset |
Glyma03g37750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g40350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37750.1 sequence type=CDS gene model=Glyma03g37750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATGCCAAGCGAAGGCGACCAGGGGATGAAAATTATGATTCAAGAACTCTCTACTTGCCTCCTGATTTCTTAAGGAGTTTGTCATATGCTCAGAAACAATGGTGGGAGTTCAAGTCTAAACATATGGACAAAGTTTTGTTTTTCAAGATGGGTAAATTTTATGAGCTTTTTGAGATGGATGCACATGTAGGTGAGAAAGAGCTTGACTTGCAGTATATGAAGGGTTATTGCATTCTTGTTGTAGAACAGACTGAAACACCTGAACAGAAGAAGGGCTCTAAAGATAAGGTTGTAAGGCGTGAAATATGTTCAGTGGTTACAAAAGGTACATTAACAGATGGGGAGTTGCTGTCAGCAAACCCTGAAGCTGCATATTTGATGGCCCTGACAGAGCATCACGAAAATCACCCAACTGAAGTTTCAGAGCATATCTATGGTGTTTGTAGAGTTGATGTTGCCACAAGTAGAGTCATTTTTGGACAGTTTAAGGATGACTTGGAGTGCAGTGCCTTGTGCTGTATCTTATCTGAGATCAGGCCTGTTGAAATTGTGAAACCTGCAAAACTACTCAGTGCTGAAACGGAGAGAGTACTGCTGAAGCATACCAGAAACCCTTTATTGAATGAATTAGTTCCAATTGTGGAATTCTGGGATGCTGACAAAACTGTGGATAAATTAAAGAGAATTTATGGGAAAACTAATGATGTTAGTGTTAATGATAATGAGTTAGATTGCCTGCCGGATGTTTTACTGGAGCTGGTGAAAACAGGTGACGACAGTAGAAGTGCACTTTCAGCACTAGGTGGTGCTCTCTATTATCTGAGACAGGCTTTTCCAGATGAGAGATTGCTTAGATTTGCACAGTTTAAGTTACTTCCTTGTTCTGGTTTTGGTGATCTTGCTTCAAAACCCTACTTGGTTCTTGACGCGGCTGCCCTGGAGAATCTTGAGATTTTTGAGAATAGCAGGAATGGAGATTCTTCAGGCACGCTCTATGCCCAACTAAACCAATGTACTTGGCTTGCAAGACCATTATGTCATGTGGAGTCAATTAAGGAACACCAGGATGCTGTTGCAGGTTTGAAGGGAGTTAATCTACCTTCTGCACTAGAATTTCTAAAAGCATTATCCAAGTTACCTGACATGGAGCGGTTGCTTGCCTGCATCTTTTCCTCTAGTGAAGCTAGTGGAAGGAATGCTAATAGAGTGGTTCTAGTTTATTTAGCTCTGCGAGGTTGTGAACAGATGGCTCAAGCATGCTCTTCACTTGGTGTCATTTTGAGTCATGTCAAATCTAGACAACTTCATCATCTGTTAACACCGGGTACGGTAAAGTTCTTCCTGATGTTTGTATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGCGGAAGCCAATAACTCTGGGCTATGACTCAGCCTGTAAGGCGGTTAAAGAGATTGAGTCCAGTTTATTGAAGCATCTTAAGGAACAAAAGAAACTACTTGGAGGCACATCAATTACTTATGTCAATGGCTTCTTTAGATACTGGTCTCCAGATATTAAAGTTTTTTTAAGAGAGCTCTCCCATGCTGAATCTGAAAAGGAGTCCTTGTTGAAAAGTACATTTCAGAGATTAATTGGGCGTTTTTGTGAACATCACACTAAGTGGAAGCAGTTGGTGTCTACAACTGCAGAACTGGATGTCTTGATCAGTTTAGCAATTGCCGGTGACTACTATGAAGGACCAACATGCAGACCTACTTTTGTAGGCACATTATGTACAAAAGAAGCTCCTTACCTGCATGCTAAAAGTTTGGGACACCCAGTCCGTAGGAGTGATACCTTAGGCAAGGGTGACTTTGTACCCAATGACATAACCATTGGTGGTTCAGATCATGCTAGCTTTATTCTTCTAACAGGTCCTAAGATGGGTGGGAAGTCAACTCTTCTTCGTCAAGTTTGCTTGACTGTGATTTTGGCCCAGGTGAAGCTTTTAAATGTTGTTACATATTTCATTATCTATTCTTTGCTTTTTTGTTGGGGGGGGGGGGGGATTGTCGAGTTTTTTTTTATCTGTGGAGTTACGATTTCTTATGCAGGTAGGAGCTACTGCATCAATGCTGAGTCATCAGCTACTTGTAATTCATTGGTGTCTCTGGGTGAGCTTGGGCGAGGGACACTGCAACTTCTGATGGGCAAGCCATTGCGCAAGGATTCAGTATTAGAACATCTTGTGCGGATGGTGCAGTGTCGCGGATTGTTTTCTACCCACTATCATCGATTAGCTGTTGATTATCTCAAAGATCCAAAA
>Glyma03g37750.1 sequence type=predicted peptide gene model=Glyma03g37750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high DAKRRRPGDENYDSRTLYLPPDFLRSLSYAQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGEKELDLQYMKGYCILVVEQTETPEQKKGSKDKVVRREICSVVTKGTLTDGELLSANPEAAYLMALTEHHENHPTEVSEHIYGVCRVDVATSRVIFGQFKDDLECSALCCILSEIRPVEIVKPAKLLSAETERVLLKHTRNPLLNELVPIVEFWDADKTVDKLKRIYGKTNDVSVNDNELDCLPDVLLELVKTGDDSRSALSALGGALYYLRQAFPDERLLRFAQFKLLPCSGFGDLASKPYLVLDAAALENLEIFENSRNGDSSGTLYAQLNQCTWLARPLCHVESIKEHQDAVAGLKGVNLPSALEFLKALSKLPDMERLLACIFSSSEASGRNANRVVLVYLALRGCEQMAQACSSLGVILSHVKSRQLHHLLTPGTVKFFLMFVWILIISRMPLIGRKPITLGYDSACKAVKEIESSLLKHLKEQKKLLGGTSITYVNGFFRYWSPDIKVFLRELSHAESEKESLLKSTFQRLIGRFCEHHTKWKQLVSTTAELDVLISLAIAGDYYEGPTCRPTFVGTLCTKEAPYLHAKSLGHPVRRSDTLGKGDFVPNDITIGGSDHASFILLTGPKMGGKSTLLRQVCLTVILAQVKLLNVVTYFIIYSLLFCWGGGGIVEFFFICGVTISYAGRSYCINAESSATCNSLVSLGELGRGTLQLLMGKPLRKDSVLEHLVRMVQCRGLFSTHYHRLAVDYLKDPK
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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