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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06790 | AT | Annotation by Michelle Graham. TAIR10: RNA polymerase Rpb7 N-terminal domain-containing protein | chr1:2087645-2089287 FORWARD LENGTH=204 | SoyBase | E_val: 3.00E-74 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| KOG3297 | KOG | DNA-directed RNA polymerase subunit E' | JGI | ISS | |
| PTHR12709 | Panther | DNA-DIRECTED RNA POLYMERASE II, III | JGI | ISS | |
| PTHR12709:SF2 | Panther | DNA-DIRECTED RNA POLYMERASE III 25 KD POLYPEPTIDE | JGI | ISS | |
| PF03876 | PFAM | RNA polymerase Rpb7-like, N-terminal domain | JGI | ISS | |
| PF08292 | PFAM | RNA polymerase III subunit Rpc25 | JGI | ISS | |
| UniRef100_G7L7Y4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase III subunit RPC8 n=1 Tax=Medicago truncatula RepID=G7L7Y4_MEDTR | SoyBase | E_val: 3.00E-79 | ISS |
| UniRef100_I1JQQ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQQ8_SOYBN | SoyBase | E_val: 6.00E-155 | ISS |
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Glyma03g37670 not represented in the dataset |
Glyma03g37670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g40280 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g218500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37670.2 sequence type=transcript gene model=Glyma03g37670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAAAACAATACTAATAAAAAACGAAAAGGGGAAAATCGGAAACGAAGTCTCGCAAAACGCAGCCTACAACGCAAGTTCGCAACCCTAACGCGAAGCTCCTCGTCGCTCCCAAGGCCTCCGCCGTCTCCGTCGCGCCAGAGTCCAGACATAGCGTCGTGAACAGTTCAATGTTCTATCTCAGTAAAATCGAACACAAATTGCCCCTGCCTCCTTCTCGTTTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAACTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTTCTGTCTATGATATCAGATCCATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCGTTTGAGAAGGAGATCATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTTTGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACAGAAAAAAAGGGTATTCTCTGGCCAAGAGTCAACGACTAATTCCTCGAGCAAGAAAGGTGTATGGTATTGGGATTATAACGAACAAGAATATCCTATTCAAGATACTGATGTGATCAAATTCCGAGTTACAAACGTGAGTTATCCCCAAATTCCGGTTGAGCAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGATCTCTGGAGCGATGGATGATGATGGTCTAGGTCCTGTTTCTTGGTGGTTTGCAGATGAGGATGAGGATGAGTAAATGTGAGTCCAAAAATGGTGAATTTTTCGTTTAAGTAATGATCTCATTCCCTAGGTTTTGTTCAGTCTAGAAGTAATTTGTTTGGTCGGATAGAAGAAATTAGTAGTTTGCTGATTTCTAGTTTAACAACTCATGTTACAACTCAGCAACAGTATACTTTTGTGCAATTCCTTTGCTTCGCAAAGTATTAAATTTAATGAAACATTGTTTGACTTTTTAATTTCTGCGTCCTGAATACCTACGGTTCAGGAAGAGAAAACTGTTTATACATTTGCTTTTGAGATCCATAATTTAAACAGTCTTTCATAGATCAAGTGTATTGAATGTTGATTTATATATATTTGGTGCCTGCGGTTCCTA
>Glyma03g37670.1 sequence type=CDS gene model=Glyma03g37670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTATCTCAGTAAAATCGAACACAAATTGCCCCTGCCTCCTTCTCGTTTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAACTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTTCTGTCTATGATATCAGATCCATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCGTTTGAGAAGGAGATCATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTTTGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACAGAAAAAAAGGGTATTCTCTGGCCAAGAGTCAACGACTAATTCCTCGAGCAAGAAAGGTGTATGGTATTGGGATTATAACGAACAAGAATATCCTATTCAAGATACTGATGTGATCAAATTCCGAGTTACAAACGTGAGTTATCCCCAAATTCCGGTTGAGCAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGATCTCTGGAGCGATGGATGATGATGGTCTAGGTCCTGTTTCTTGGTGGTTTGCAGATGAGGATGAGGATGAGTAA >Glyma03g37670.2 sequence type=CDS gene model=Glyma03g37670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTCTATCTCAGTAAAATCGAACACAAATTGCCCCTGCCTCCTTCTCGTTTTGTTCTTCCTATTCGAGAAGCTATACACATGGAGCTTGAGAAACTTTTCTTAGATAAGGTTATAGCAAACTTGGGCCTCTGCATTTCTGTCTATGATATCAGATCCATTGATGGTGGGTTTATCTTCCCTGGTGATGGGGCTCCAACCTATACGGTTGTGTTCAATTTGATTATGTTTCGTCCGTTTGAGAAGGAGATCATTACTGCAAGGCTTCTTTCATCTGATGCTGATGGCTTACGATTAACCATTGGATTCTTTGATGATATTTATATTCCTGCAAGTCGTTTGCCCGACCCAAACCACTTTGTTGAGACTGAACAGAAAAAAAGGGTATTCTCTGGCCAAGAGTCAACGACTAATTCCTCGAGCAAGAAAGGTGTATGGTATTGGGATTATAACGAACAAGAATATCCTATTCAAGATACTGATGTGATCAAATTCCGAGTTACAAACGTGAGTTATCCCCAAATTCCGGTTGAGCAACCAAAAGAATCAAAGCCATTTGCCCCTATGTTGATCTCTGGAGCGATGGATGATGATGGTCTAGGTCCTGTTTCTTGGTGGTTTGCAGATGAGGATGAGGATGAGTAA
>Glyma03g37670.1 sequence type=predicted peptide gene model=Glyma03g37670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYLSKIEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFFDDIYIPASRLPDPNHFVETEQKKRVFSGQESTTNSSSKKGVWYWDYNEQEYPIQDTDVIKFRVTNVSYPQIPVEQPKESKPFAPMLISGAMDDDGLGPVSWWFADEDEDE* >Glyma03g37670.2 sequence type=predicted peptide gene model=Glyma03g37670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFYLSKIEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAPTYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFFDDIYIPASRLPDPNHFVETEQKKRVFSGQESTTNSSSKKGVWYWDYNEQEYPIQDTDVIKFRVTNVSYPQIPVEQPKESKPFAPMLISGAMDDDGLGPVSWWFADEDEDE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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