Glyma03g37550 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g37550

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44141536
stop:	44146170
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02730	AT	Annotation by Michelle Graham. TAIR10: cellulose synthase-like D5 \| chr1:594697-598473 REVERSE LENGTH=1181	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0000724	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006970	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to osmotic stress	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0042127	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0051329	GO-bp	Annotation by Michelle Graham. GO Biological Process: interphase of mitotic cell cycle	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0046527	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucosyltransferase activity	SoyBase	N/A	ISS
GO:0051753	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mannan synthase activity	SoyBase	N/A	ISS
PTHR10587	Panther	N-ACETYLGLUCOSAMINYLTRANSFERASE-RELATED	JGI		ISS
PTHR10587:SF9	Panther	gb def: putative cellulose synthase catalytic subunit protein [sinorhizobium meliloti]	JGI		ISS
PF03552	PFAM	Cellulose synthase	JGI		ISS
UniRef100_B9SAX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase A catalytic subunit 3 [UDP-forming], putative n=1 Tax=Ricinus communis RepID=B9SAX4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339BF4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339BF4 related cluster n=1 Tax=unknown RepID=UPI0002339BF4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g37550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37550

Paralog	Evidence	Comments
Glyma19g40170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g217500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g37550

Limit To All Plant Sequences

>Glyma03g37550.1   sequence type=CDS   gene model=Glyma03g37550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAATACGGCGTCGTCCCCTTCTTCCTCTCCGGTGACCATTACGGTGTCGTCCGGAGGACGACGCCGCAGCATGGGTCTAACCAGTCCTGTTCCACGCGCCTCCGTCTCCGCCAACAACCCCGCTTCCCCTCTCAGGGTTTCCGGCGGCCGCGGCGGCGGCGCGTCTAAAGACGGCGGCATCGAAGAAACCAACACCGAATACGTGTCGTACACAGTCCACATCCCTCCGACGCCGGACCGCAGGCCGCTGACAGCCTCGGAGGACGGTGGAAAGAACAGCACGAGCTTCATCTCCGGCACGATCTTCACAGGAGGGTACAACTCCGTGACGCGCGGCCACGTCATGGAGTGCTCGATGGACAGCGATGCGCAGGCGAAAACGACATCGTTGACGGTTTGCGGAATGATGGGCTGTGACGAGGAAGCGATGAAAGGAAGGCTGTGTGGTGGTGGACCGTGCGAGTGCGGGTTCAAGATCTGCAGAGAGTGTTACTCGGAGTGTGGAGGGAAGTGCCCTGGCTGCAAAGCGCCTTATAAGTATGTGAGCGATGATGATGAGGAAGAAGAAGACGACGTTGAGGGGTCTGAGGGTGAGGATCAGCCTCTGCCTTTGCCTTCGATGGCTGAGTTTAAGTTGGATAAGAGGCTTTCTGTTGTGAAATCGTTCAAGACGCAGAACCATCCTCCTGATTTTGACCACACGAGGTGGCTATTTGAGACCAAGGGGACCTATGGCTATGGAAACGCTGTGTGGCCTAAAGATGGGTGTGGTGCTAATGGGTTTGAACCCCCTCCGGAGTTTGGAGAGAAGGCGAGGAGACCCTTGACTAGGAAGGTTGGAGTTTCAGCTGCTATTATCAGTCCTTATAGGTTGCTTATTCTGCTGCGTCTTGTTGCCTTGGGTTTATTTCTTACGTGGAGGGTTAGACACCCCAACCATGAAGCGATTTGGCTGTGGGCTATGTCCATAACTTGCGAGCTATGGTTTGCATTTTCTTGGATTCTTGATCAGCTTCCTAAGCTCTGTCCAGTGAACAGAGTCACTGATCTCTCTGTTCTGAAAGAGCGGTTTGAGTCTCCGAACCTGCGAAACCCGAAAGGGAGGTCTGATCTACCAGGAATTGACGTGTTTGTTTCCACAGCAGACCCTGAAAAGGAACCTCCTCTTGTAACCGCCAACACCATTCTCTCGATCCTTGCAGTTGATTATCCAGTGGAGAAGGTTGCGTGTTACTTGTCTGATGATGGTGGAGCTCTGTTGACATTTGAAGCTCTTGCTGAGACTGCTAGCTTTGCTAGAATTTGGGTTCCTTTCTGTCGGAAGCATCACATAGAGCCGCGAAATCCTGAAACGTATTTTGGGCAGAAGCGTGATTTTCTCAAGAACAAGGTCCGGTTGGACTTTGTGAGAGAGAGGAGAAGGGTGAAGAGGGAATATGATGAGTTCAAAGTGAGGATAAACTCATTGCCTGAATCCATAAGGAGAAGGTCTGATGCTTACAATGCTCACGAGGAGTTGCGAGCTAAGAAGAAACAGATGGAAGCAGGTTCCAATGTCTCTGAACCTATTAAGGTTCCTAAAGCTACATGGATGTCCGATGGTTCTCATTGGCCAGGAACTTGGGCATCGGGTGATCAAGACCACTCAAGAGGGGACCATGCTGGTATAATTCAGGCAATGTTAGCTCCACCAAATGCAGAACCAGAATTTGGTGCAGAAGCTGATGGGGATAACTTGATTGACACAACAGATGTTGATATTAGGCTTCCCATGCTTGTTTATGTGTCTCGTGAGAAGAGGCCAGGATATGATCACAACAAGAAAGCAGGAGCAATGAATGCTCTTGTTCGGACCAGTGCCATCATGTCCAATGGACCATTCATTCTGAATCTTGACTGTGATCACTACATCTACAACTCCTTGGCTATGAGAGAAGGTATGTGCTTTATGCTTGACAGGGGTGGTGATAGGATATGCTACGTTCAGTTCCCTCAAAGATTTGAGGGCATCGACCCCAGTGACAGATATGCAAACCACAACACAGTGTTCTTTGATGTGAGCATGAGAGCTCTTGATGGCTTACAAGGCCCCATGTACGTGGGAACGGGTTGCATATTCCGAAGAACAGCTCTTTATGGATTTAGTCCTCCAAGAGCCACAGAACACCATGGCTGGTTAGGCAGGAGGAAAATCAAGTTGTTTTTGAGAAAGCCAAAGGTGTCAAAAAAGGAAGAGGATGAAATTTGTGTGCCAATAAATGGTGGTTACAATGACGATGATGCAGACATAGAGTCCTTGCTTCTTCCCAGAAGGTTCGGGAACTCTACTTCTCTTGCTGCATCCATTCCTGTGGCGGAATACCAGGGAAGGTTGCTTCAAGATTTGCAAGGAAAGGGAACACAAGGAAGGCCAGCAGGTTCTCTTGCCGTGCCTCGCGAGCCATTGGATGCAGCCACTGTTGCTGAGGCAATAAGTGTGATATCTTGTTTCTACGAGGATAAAACTGAATGGGGCAAACGAGTGGGGTGGATATATGGTTCAGTTACAGAAGATGTGGTCACTGGTTACAGAATGCACAATAGAGGGTGGAGATCAGTGTACTGTGTGACCCAAAGGGATGCTTTCAGAGGAACAGCTCCAATCAACTTGACAGATAGGCTCCACCAAGTGCTTCGATGGGCAACAGGTTCTGTTGAGATTTTCTTGTCAAGGAACAATGCATTGTTGGCAAGTCCTAGAATGAAGTTCCTGCAGAGGGTGGCATATTTCAACGTGGGAATGTACCCTTTCACTTCAATCTTTCTGATTGTCTATTGCTTTCTACCAGCAGTGTCCCTATTTTCGGGGCAGTTTATAGTCCAGTCCCTTAGTGCAACCTTTCTAGTCTTCTTGCTTGGCATCACAATCACACTGTGCTTGCTTGCACTCCTCGAGATCAAGTGGTCAGGAATCACTCTACATGATTGGTGGCGAAATGAGCAGTTCTGGTTGATTGGTGGAACAAGTGCACACCCTGCTGCTGTTTTACAAGGGTTGTTGAAGGTCATAGCAGGAGTGGACATATCATTCACTTTGACCTCAAAGTCAGCCACCCCAGAAGATGGAGATGATGAGTTTGCTGATCTTTATGAGGTGAAGTGGAGCTTTCTAATGGTCCCTCCAATCACTATTATGATGGTGAATTCCATTGCTATTGCTGTGGGGGTAGCCAGGACTTTGTACAGTCCATTTCCACAATGGAGCAGACTAGTAGGAGGGGTGTTTTTCAGCTTCTGGGTTTTGTGCCATCTTTACCCCTTTGCAAAGGGCCTCATGGGAAGGAGAGGGAAGGTTCCTACCATCATCTATGTTTGGTCTGGATTGCTCTCCATTATTATCTCTTTGCTTTGGGTGTACATAAACCCTCCTTCAGGAAGAACACAAGATTACATGAATTTCCAATTCCCTTGA

Predicted protein sequences of Glyma03g37550

Limit To All Plant Sequences

>Glyma03g37550.1   sequence type=predicted peptide   gene model=Glyma03g37550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVNTASSPSSSPVTITVSSGGRRRSMGLTSPVPRASVSANNPASPLRVSGGRGGGASKDGGIEETNTEYVSYTVHIPPTPDRRPLTASEDGGKNSTSFISGTIFTGGYNSVTRGHVMECSMDSDAQAKTTSLTVCGMMGCDEEAMKGRLCGGGPCECGFKICRECYSECGGKCPGCKAPYKYVSDDDEEEEDDVEGSEGEDQPLPLPSMAEFKLDKRLSVVKSFKTQNHPPDFDHTRWLFETKGTYGYGNAVWPKDGCGANGFEPPPEFGEKARRPLTRKVGVSAAIISPYRLLILLRLVALGLFLTWRVRHPNHEAIWLWAMSITCELWFAFSWILDQLPKLCPVNRVTDLSVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKVACYLSDDGGALLTFEALAETASFARIWVPFCRKHHIEPRNPETYFGQKRDFLKNKVRLDFVRERRRVKREYDEFKVRINSLPESIRRRSDAYNAHEELRAKKKQMEAGSNVSEPIKVPKATWMSDGSHWPGTWASGDQDHSRGDHAGIIQAMLAPPNAEPEFGAEADGDNLIDTTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYIYNSLAMREGMCFMLDRGGDRICYVQFPQRFEGIDPSDRYANHNTVFFDVSMRALDGLQGPMYVGTGCIFRRTALYGFSPPRATEHHGWLGRRKIKLFLRKPKVSKKEEDEICVPINGGYNDDDADIESLLLPRRFGNSTSLAASIPVAEYQGRLLQDLQGKGTQGRPAGSLAVPREPLDAATVAEAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTQRDAFRGTAPINLTDRLHQVLRWATGSVEIFLSRNNALLASPRMKFLQRVAYFNVGMYPFTSIFLIVYCFLPAVSLFSGQFIVQSLSATFLVFLLGITITLCLLALLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSATPEDGDDEFADLYEVKWSFLMVPPITIMMVNSIAIAVGVARTLYSPFPQWSRLVGGVFFSFWVLCHLYPFAKGLMGRRGKVPTIIYVWSGLLSIIISLLWVYINPPSGRTQDYMNFQFP*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain