SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G05710 | AT | Annotation by Michelle Graham. TAIR10: syntaxin of plants 43 | chr3:1685262-1687229 FORWARD LENGTH=330 | SoyBase | E_val: 9.00E-159 | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007034 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuolar transport | SoyBase | N/A | ISS |
| GO:0009306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein secretion | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:1900150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response to fungus | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005802 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network | SoyBase | N/A | ISS |
| GO:0005484 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: SNAP receptor activity | SoyBase | N/A | ISS |
| KOG0809 | KOG | SNARE protein TLG2/Syntaxin 16 | JGI | ISS | |
| PTHR19957 | Panther | SYNTAXIN | JGI | ISS | |
| PTHR19957:SF57 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00804 | PFAM | Syntaxin | JGI | ISS | |
| PF05739 | PFAM | SNARE domain | JGI | ISS | |
| UniRef100_B7X6S7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Syntaxin n=1 Tax=Nicotiana tabacum RepID=B7X6S7_TOBAC | SoyBase | E_val: 9.00E-159 | ISS |
| UniRef100_UPI0002339BF3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339BF3 related cluster n=1 Tax=unknown RepID=UPI0002339BF3 | SoyBase | E_val: 0 | ISS |
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Glyma03g37540 not represented in the dataset |
Glyma03g37540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g40160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g217400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37540.1 sequence type=CDS gene model=Glyma03g37540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGACGAGAAATCGAACTCTAGAGTTCAGAAAACACAGAGACGCCGTGAAAAGCGTGCGCGCTCCTCTCTCCTCCTCAGCATCTAGTCCTGTCATCGAAATGGTTACAACTTCGCTTCTTCCTTCTAATCGATCCTCCTATGCTCCTCTAAGCACCCAGGAACATGCTCCATCCACTTCTAGGGATGCGTTTACTGTGGGGTTGCCGCCATCTTGGGTGGATGATTCTGAAGAAATAGCTACAAATATACAACGTGCTAGGGTTAGAATTTCTGAGTTAACCAAAGCTCATGCGAAGGCTTTGATGCCTTCCTTTGGGGATGGCAAAGAGGATCAGCGTCATATTGAGACTCTCACCCAGGAAATTACTTCTCTCCTCAGAAAGTCTGAAGTGAGGCTCAAAAGACTTTCTGCCGCTGCTGGATCTTCTGAGGATTCTAATGTTAGAAAAAATGTTCAGCGTTCCCATGCTACAGATCTTCAGAACCTGTCAATGGATCTCCGGCGAAAACAGTCAGCATATTTGAAACATTTGCAGCAGCAACAAGAGGGTTATGATGGGGTTGACTTGGAGATGAACTTTAATGGGAGCAAATTTGTATCCCATAATGATGAATTCAGTGATGTGGGTTTTAGTGAAGAGCAAATGACCAAGCTAAAGAGAAGTGAGCAGTTCTCAGAGGAAAGGGAGAGAGAGATTGAACAGGTTGTCAAATCAGTCCATGAACTTGCTCAAATCATGAAGGATCTCTCTGTCCTTGTGATAGACCAGGGAACAATTGTGGATAGAATTGACTACAACATTCAGAGTGTTTCTACATCCGTTGAAGAGGGTCTTAAGCAGTTGCAAAAGGCAGAGAGAATACAGAAAAAAGGAGGGATGGTTATGTGTGCATCAACGCTTGTTATAATGTGCTTTGTCATGCTAGTTCTCTTGATACTCAAGGAGATTCTCTTCTAG
>Glyma03g37540.1 sequence type=predicted peptide gene model=Glyma03g37540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATRNRTLEFRKHRDAVKSVRAPLSSSASSPVIEMVTTSLLPSNRSSYAPLSTQEHAPSTSRDAFTVGLPPSWVDDSEEIATNIQRARVRISELTKAHAKALMPSFGDGKEDQRHIETLTQEITSLLRKSEVRLKRLSAAAGSSEDSNVRKNVQRSHATDLQNLSMDLRRKQSAYLKHLQQQQEGYDGVDLEMNFNGSKFVSHNDEFSDVGFSEEQMTKLKRSEQFSEEREREIEQVVKSVHELAQIMKDLSVLVIDQGTIVDRIDYNIQSVSTSVEEGLKQLQKAERIQKKGGMVMCASTLVIMCFVMLVLLILKEILF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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