Glyma03g37470 - SoyBase

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Report for Sequence Feature Glyma03g37470

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44077233
stop:	44081904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G40940	AT	Annotation by Michelle Graham. TAIR10: ethylene response sensor 1 \| chr2:17084635-17086819 REVERSE LENGTH=613	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010105	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0016310	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorylation	SoyBase	N/A	ISS
GO:0018106	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-histidine phosphorylation	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004673	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0051740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ethylene binding	SoyBase	N/A	ISS
KOG0519	KOG	Sensory transduction histidine kinase	JGI		ISS
PTHR24423	Panther	TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED	JGI		ISS
PTHR24423:SF158	Panther		JGI		ISS
PF00512	PFAM	His Kinase A (phosphoacceptor) domain	JGI		ISS
PF01590	PFAM	GAF domain	JGI		ISS
PF02518	PFAM	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	JGI		ISS
UniRef100_A4ZPP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene receptor n=1 Tax=Glycine max RepID=A4ZPP2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JQP1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQP1_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma03g37470

Locus	Gene Symbol	Protein Name
	ERS2	root preferential, Histidine Kinase

Expression Patterns of Glyma03g37470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37470

Paralog	Evidence	Comments
Glyma19g40090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g216700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g37470

Limit To All Plant Sequences

>Glyma03g37470.1   sequence type=CDS   gene model=Glyma03g37470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTCCTGTGATTGTATAGATACGCAGTATCCGCCGGATGAACTTCTTGTGAAGTATCAGTATATCTCGGATGTGCTAATTGCTCTTGCGTATTTTTCGATTCCGGTGGAGCTCATCTATTTTGTTCAGAAGTCTGCTTTCTTTCCGTATAGATGGGTGCTTATGCAGTTTGGTGCCTTTATTGTTCTCTGTGGAGCAACTCATTTCATAAACCTGTGGACATTCTCTCCGCACTCTAAGTCTGTTGCTGTTGTCATGACGATTGCCAAAGTTTCGTGTGCTATTGTGTCATGTGCGACGGCACTGATGCTTGTACACATTATTCCCGATCTGTTGAGTGTCAAGAGGCGCGAATCGATCCTCAAGAACAAGGCTGAAGAGCTTGACAGAGAGATGGGACTTATTCTTACTCAGGAAGAGACGGGAAGACATGTTAGAATGTTGACTCATGAAATTAGGAGCACACTTGACAGGCATACAATTTTAAAGACTACTCTTGTGGAGCTGGGGAGGACTTTGGGCTTGGAGGAGTGTGCATTATGGATGCCTTCGAGAAGTGGTCTGAATCTGCAACTTTCCCATACTTTAACCTATCATGTGCAAGTTGGGTCTACGGTGCAAACAAACAATCCTATTGTCAATGAAGTTTTCAACAGCCCTCAAGCTATGCGGATACCACCCACCTGTCCATTGGCCAGGATCAGACCTCTTGTGGGAAGATATGTGCCCCCTGAAGTTGTTGCTGTTCGGGTGCCGCTTTTGAATCTGTCAAATTTTCAAATTAACGATTGGCCTGATATTTCAGCAAAGAGCTATGCAATCATGGTTCTCATCCTCCCTACTGACAGTGTTAGAAAATGGCGAGACCATGAGTTGGAACTTGTTGATGTTGTTGCAGATCAGGTAGCAGTTGCCCTTTCACATGCTGCTATTTTGGAGGAGTCTATGCGTGCCCGTGATCAACTCATGGAGCAGAATGTTGCTTTAGATTTAGCCCGGCGAGAGGCAGAGATGGCAATTCATGCTCGCAATGATTTTCTTGCTGTCATGAATCATGAAATGAGGACACCAATGCATGCAATTATAGCATTGTCATCACTTCTCTTGGAGACTGAACTGACGCCAGAGCAAAGGGTTATGATAGAGACAGTGTTGAAGAGTAGTAATGTTTTGGCAACACTCATTAATGATGTTCTAGATCTTTCTCGACTTGAAGATGGTAGCCTCGAATTAGAAATGGGAAAATTCAACCTCCATGGAGTTTTGGGAGAGATTGTTGAACTGATAAAACCAATAGCATCCGTGAAAAAGTTACCTATCACCTTAATTCTGTCTCCTGATCTGCCTACTCATGCCATTGGTGATGAAAAGCGGCTTACACAAACTCTTTTGAATGTCGTGGGTAATGCTGTCAAATTCACTAAGGAGGGCTATGTTTCTGTAAGAGTATCAGTTGCAAAACCAGAATCTTCACAGGATTGGCGACCTCCAGAGTTTTATCCAGCATCTAGTGATGGCCATTTCTACATTCGAGTCCAGGTTAAGGACTCTGGATGTGGGATTCTCCCACAAGATATTCCGCATCTCTTTACCAAGTTTGCCCAGTCTCGGAGTGGACCAGCTCGACCTAGCAGTGGTGCAGGTCTTGGGCTTGCCATTTGTAAAAGATTTGTAAACCTCATGGGAGGCCACATATGGATTGAGAGTGAGGGCCTTGACAAAGGAAGCACAGCTACATTTATAGTCAAACTTGGGATTTGTGGCAATCCAGATCCATCCGATCATCAAGCTGCAAACAGAAGCCAAGCATATAGTGGAAGTGGTGGCCTCGCTAGATTTAAACCCTTCATCACAGATGAAAACGACACTGGTTTTTCTACTAGACGCAATCAAAGAAGTTTCTAA

Predicted protein sequences of Glyma03g37470

Limit To All Plant Sequences

>Glyma03g37470.1   sequence type=predicted peptide   gene model=Glyma03g37470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESCDCIDTQYPPDELLVKYQYISDVLIALAYFSIPVELIYFVQKSAFFPYRWVLMQFGAFIVLCGATHFINLWTFSPHSKSVAVVMTIAKVSCAIVSCATALMLVHIIPDLLSVKRRESILKNKAEELDREMGLILTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLGLEECALWMPSRSGLNLQLSHTLTYHVQVGSTVQTNNPIVNEVFNSPQAMRIPPTCPLARIRPLVGRYVPPEVVAVRVPLLNLSNFQINDWPDISAKSYAIMVLILPTDSVRKWRDHELELVDVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAEMAIHARNDFLAVMNHEMRTPMHAIIALSSLLLETELTPEQRVMIETVLKSSNVLATLINDVLDLSRLEDGSLELEMGKFNLHGVLGEIVELIKPIASVKKLPITLILSPDLPTHAIGDEKRLTQTLLNVVGNAVKFTKEGYVSVRVSVAKPESSQDWRPPEFYPASSDGHFYIRVQVKDSGCGILPQDIPHLFTKFAQSRSGPARPSSGAGLGLAICKRFVNLMGGHIWIESEGLDKGSTATFIVKLGICGNPDPSDHQAANRSQAYSGSGGLARFKPFITDENDTGFSTRRNQRSF*

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