Glyma03g37450 - SoyBase

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Report for Sequence Feature Glyma03g37450

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44058062
stop:	44066213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02260	AT	Annotation by Michelle Graham. TAIR10: RELA/SPOT homolog 1 \| chr4:985451-991178 FORWARD LENGTH=883	SoyBase	E_val: 0	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0015969	GO-bp	Annotation by Michelle Graham. GO Biological Process: guanosine tetraphosphate metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008081	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR21262	Panther	GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE	JGI		ISS
PF01966	PFAM	HD domain	JGI		ISS
PF02824	PFAM	TGS domain	JGI		ISS
PF04607	PFAM	Region found in RelA / SpoT proteins	JGI		ISS
UniRef100_B9SAV1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9SAV1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023373AF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023373AF related cluster n=1 Tax=unknown RepID=UPI00023373AF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g37450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37450

Paralog	Evidence	Comments
Glyma19g40050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g216400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g37450

Limit To All Plant Sequences

>Glyma03g37450.1   sequence type=CDS   gene model=Glyma03g37450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGCATCCTCCTTATCTGTTTCTCTAGAATGCGTGAACGCGTGCAAGCTGTGGAGAGGGGATGGAAATGGAAGATTCGACTGTAGTCTTCTATCGTCCGCGTGGAAAGCTCCGAGGGTTCTCACTGGCTTTCTTGCCAGCACTGCTCATCCTCATCAGTGTTCGGACTTGTCGAATGGGCGCAACGGACGAAGGAACCGGTATAATTTTGGGTGTGAAACCTTTAGTGTAGATGGTTCATGTCGTGATGAACCAATTGATATCGTACTTTTTGAAGGATGCTCTAGATCTATGTTGTCTCAAAATGCTCCTAGGAGATGGCAATTGTGTTGTTCTTTGGCCCCGGATGCTGTCACTGATTTTTCTGCGGAAAGTTTGTGGGAGGATCTTACACCTGTTATCTCATACCTGTCTCCTAAAGAACTGGAGTTAGTCTACAATGCTTTTATGTTGGCGTTTAAAGCTCATGATGGTCAGAAAAGACGCAGTGGTGAACCCTTCATCATTCACCCAGTCGAGGTTGCACGTATTCTGGGAGAACTTGAACTTGACTGGGAGTCGATTGCTGCTGGATTACTTCATGATACAGTTGAGGATACAAATGTCGTTACTTTTGAGAGGATAGAGGAGGAATTTGGTGCTACTGTGCGACACATTGTGGAAGGAGAGACCAAGGTGTCGAAACTGGGAAAGTTGAAGTATAAGAATGAAAATGATTCTGTGCAAGATGTGAAAGCAGAAGATCTTCGGCAAATGTTTCTGGCTATGACTGAGGAGGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACGCTATCACATATGCCTCCTCATAAACAGACTAGCATTGCGATGGAGACATTGCAGGTATTTGCTCCTTTGGCAAAGTTGCTTGGGATGTATCAAATAAAGTCAGAACTAGAAAATCTATCATTTATGTACACAAATGCGGAAGACTATGCTAAGGTGAAGAGAAGAGTAGCAGAGCTATACAAAGAACATGAGAAAGAACTTCTGGAGGCAAACAAAATGTTGATGAAGAAAATCCAAGATGATCAATTCTTAGACCTTCTAACTGTTAAAACAGAAGTTCGTGCTGTATGTAAAGAGCCTTACAGTATCTATAAAGCTGTTCTCAAATCAAAAAGTTCAATCAATGAGATTAACCAAATTGCACAGCTTCGTATTATTATTAAACCGAAGCAATGCATTGGGGTTGGGCCTTTATGCAATCCACAGCAGATTTGCTATCATGTTCTGGGGTTGATCCATGGAATCTGGACCCCTATTCCTAGATCTGTGAAGGATTATATTGCAACCCCTAAACCAAATGGCTACCAGAGTCTTCAGACCACTGTGATTCCATTTTTGTATGAGAGCATGTTTAGGCTAGAAGTCCAGATTAGAACAGAAGAAATGGATTTGATAGCTGAGAGGGGCATTGCTGCTCATTATAGTGGGAGAGAATTTGTCACAGGCTTGGTTGGAAGTGCAACACCAAGTAGTAAAAGCTCAAGAGGGAAGACAGTTTGTCTGAACAATGCCAATATTGCACTCAGAATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACTATTACAAGAGATCTGCTGGGCAGTCGTGTCTTTGTGTTCACACCAAGGGGAGAGATTAAGAATCTTCCTCAGGGTGCTACTGTCATTGACTACGCTTATATGATACACACTGAAATAGGCAACAAGATGGTAGCTGCAAAGGTCAATGGAAATCTTGTTTCTCCCGCTCATGTACTTGCAAATGCAGAAGTTGTGGAGATAATCACATATAATGCACTTTCCACCAAATCAGCTTTTCAGAGGCATAAGCAGTGGCTGCAACATGCTAAAACACGTAGTGCAAGACATAAAATAATGAAGTTTCTGAGGGAGCAAGCTGCACGCTCTGCTGCTGATATCACTACGGAAGCAGTCAATGACTTTGTCATTGATTCTGACGGGGATAGTGAATCTGAAGAAGTGTCAAAAGGTTCCAGTGGCTCTAAATATACGTGGGGTAAAATGTTTGTGAATGGAGCCGAAATATCAACTTCGGGAAGAAGTGAGACTGTCCTCCAAAGTAACAATGGAAGTGCTTGGATCCCTAAGGTCAATGGAAAACATAATAAGCATGTGCAGCATGAAAGTTTCAACGGCAAAGGGGAGATGCTACTGCAGGGAAACCTTGTCGCAAAGATGATTCAAGTTAACATTCCAAGATATAAGGAAGTCCTGCCAGGTTTAGAAAGTTGGCAAGCCCAGAAAATTGCTTCTTGGCACAATATGGAAGGGCACTCCATCCAATGGTTATCTGTAGTATGTATAGACCGAAAAGGCATGATGGCTGAGGTCACTACAGCATTGGCCACTGCAGGCATAGCCATATGTTCTTGTGTGGCTGAGATTGATGGAGGAAGGGGAATGGCTGTTATGGTATTTCACGTAGAAGGAAATTTGGAAAATTTGGTCACTGCTTGCTCTAAAGTAGATCTGATATTGGGTGTTTTGGGATGGTCTACCGGTTGCAGCTGGCCAAGCTTGATGGAAGACCGTGGCGTTCTCGAATGCTAG

Predicted protein sequences of Glyma03g37450

Limit To All Plant Sequences

>Glyma03g37450.1   sequence type=predicted peptide   gene model=Glyma03g37450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASASSLSVSLECVNACKLWRGDGNGRFDCSLLSSAWKAPRVLTGFLASTAHPHQCSDLSNGRNGRRNRYNFGCETFSVDGSCRDEPIDIVLFEGCSRSMLSQNAPRRWQLCCSLAPDAVTDFSAESLWEDLTPVISYLSPKELELVYNAFMLAFKAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRHIVEGETKVSKLGKLKYKNENDSVQDVKAEDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQTSIAMETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAELYKEHEKELLEANKMLMKKIQDDQFLDLLTVKTEVRAVCKEPYSIYKAVLKSKSSINEINQIAQLRIIIKPKQCIGVGPLCNPQQICYHVLGLIHGIWTPIPRSVKDYIATPKPNGYQSLQTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGREFVTGLVGSATPSSKSSRGKTVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVDTITRDLLGSRVFVFTPRGEIKNLPQGATVIDYAYMIHTEIGNKMVAAKVNGNLVSPAHVLANAEVVEIITYNALSTKSAFQRHKQWLQHAKTRSARHKIMKFLREQAARSAADITTEAVNDFVIDSDGDSESEEVSKGSSGSKYTWGKMFVNGAEISTSGRSETVLQSNNGSAWIPKVNGKHNKHVQHESFNGKGEMLLQGNLVAKMIQVNIPRYKEVLPGLESWQAQKIASWHNMEGHSIQWLSVVCIDRKGMMAEVTTALATAGIAICSCVAEIDGGRGMAVMVFHVEGNLENLVTACSKVDLILGVLGWSTGCSWPSLMEDRGVLEC*

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