Glyma03g37240 - SoyBase

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Report for Sequence Feature Glyma03g37240

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43922699
stop:	43927914
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02840	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:626918-628995 FORWARD LENGTH=285	SoyBase	E_val: 9.00E-107	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016607	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear speck	SoyBase	N/A	ISS
GO:0035061	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: interchromatin granule	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0105	KOG	Alternative splicing factor ASF/SF2 (RRM superfamily)	JGI		ISS
PTHR10548	Panther	ARGININE/SERINE-RICH SPLICING FACTOR	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7LC00	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pre-mRNA-splicing factor SF2 n=1 Tax=Medicago truncatula RepID=G7LC00_MEDTR	SoyBase	E_val: 2.00E-146	ISS
UniRef100_I1JQL9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQL9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g37240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37240

Paralog	Evidence	Comments
Glyma19g39850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g214400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g37240

Limit To All Plant Sequences

>Glyma03g37240.4   sequence type=CDS   gene model=Glyma03g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATAAAATCACACATTTTTTCCCCCAATTTCCCTTTCTTGTGTTTTCATTCTGTTCTAAAATCAAAAACCCTAACCAAGAAAGTTTTCACCGCATCTCCACCTATTCTCAATCTCCACAAATCGAAGAAAAGAGAATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTCTGAAGTATGGACACATAACACACATTGACCTAAAGGTTCCCCCAAGACCACCTGGTTATGCATTTGTAGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGTCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGATACAATAGTCACAGCAATGGCCGAGGTGGACGTGGGGTGTCTAGGCGCTCTGAATATCGTGTTCTAGTCTCTGGATTGCCCTCTTCGGCATCCTGGCAGGATCTTAAGGATCACATGCGTAAGGCAGGGGATGTTTGTTTTTCTCAAGTTTTTCATGATGGAAGGGGTACTACCGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGATATGTTCGGGTGAGAGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGTCGTGGCCCATCTCATTCTAGAGGAAGGAGCTATAGCCGCAGTCGTAGCCGTAGCCGTAGTTACAGTCGGGACCGGAGCCAAAGCAAATCTCCAAAGGGTAAGTCTTCACAGCGTTCACCTGCTAAATCTCCATCAAGATCTCCCTCTCGTTCAAGATCAAGGTCCCGATCGTTATCAGGATATGGAAACTTGCAGCGTACTGGAAATTGGAAATTAGGATCTTGGTGGGATTTGGTTCAATTGTCTGCAACTCATTTTGTTGTGGAGATCACGGTCCAGGTCCAGGTCCCCATTGCCTCCGCGTAA

Predicted protein sequences of Glyma03g37240

Limit To All Plant Sequences

>Glyma03g37240.4   sequence type=predicted peptide   gene model=Glyma03g37240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
YKITHFFPQFPFLVFSFCSKIKNPNQESFHRISTYSQSPQIEEKRMSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRYNSHSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSRSPSRSRSRSRSLSGYGNLQRTGNWKLGSWWDLVQLSATHFVVEITVQVQVPIASA*

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