SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02440 | AT | Annotation by Michelle Graham. TAIR10: F-box family protein | chr4:1072555-1073565 FORWARD LENGTH=336 | SoyBase | E_val: 2.00E-115 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009585 | GO-bp | Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction | SoyBase | N/A | ISS |
| GO:0010099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis | SoyBase | N/A | ISS |
| GO:0032880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein localization | SoyBase | N/A | ISS |
| GO:0042752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF00646 | PFAM | F-box domain | JGI | ISS | |
| UniRef100_B9SAQ8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO | SoyBase | E_val: 2.00E-127 | ISS |
| UniRef100_I1JQL8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQL8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g37230 not represented in the dataset |
Glyma03g37230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g214300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37230.1 sequence type=CDS gene model=Glyma03g37230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATAGTGAAATTGAAAAGAAGAAGAACCTGTTTTCGGAACTAACCGACGACATCGTTCTGAACATCTTCTACAAACTCGAAGACGATCCTCGCCACTGGGCTCGCTTAGCCTGTGTCTGCACCAAATTCTCTTCCCTCGTTAGGGATTTCTGTTGGAAGACCAAATGCTCCCTCACCATCCCCCAAGACCTCCTCTCCGCCGCCGCCTCCGACCCCCCTCTCTCCCTCCACAAACTCTCCTTCTGCTGCCCCGGCCTCCGCCACGCCGGCCTCCTGTTCGACACCTCCGATTTCGGCCTCGAACGCGACCTCGGCCCCGGCAACTTCAACGTCATCACCGATGATTCTCCTTCGAACACCACTCCACCACCACCACCACCACCACCACAACAACAACAACAACAACCTCCTCAATCCGATGATTGTTCTTCCTCTTGTTGGTCCCTTTACGATGACCTCTACTACGACACGCTCTACGTCCCAACCGAGTCCGAGTCGCCGCGATTAACGGAATCCGTTAGCGTAAGAGCGGGCGTGGATGTGGCTTCGATCAGCGCGTGCAGCAAGAAGCGCAAGCTCTCCCGCGCGTGGAGCTCACACCTGGCTTCGGGAAGCTGGACACTAAGCCGTGAACAAGGAAGCAAGCTCCTGGCGCGTAAGTTCCGGTACGATTGCTTGTACGTGTGCGAGTGGCCAGGGTGCGTGCACAAGGAGGAGAAGCGCAAGTACTGCCTCTTCAGAGGGGTTTTCAAGAACTTCAGGCGAACTATGGTTTGGAGGACTATTCAGGATGGGAAGAAGAGGAAGATGGATCTGCCTTGCGCCTTCTGCGCGTGTGAGTTCACGTGGGATCTGCACTCTTCCTTTTGCTTGAGGCCTGGCTTTGGCTTCCATGACGATGGGGAGCCTATGGTTAGGGCTTATGTTTGTGAGAATGGACATGTCTCTGGTGCCTGGACCGATCTTCCCATCTACACTTGA
>Glyma03g37230.1 sequence type=predicted peptide gene model=Glyma03g37230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSEIEKKKNLFSELTDDIVLNIFYKLEDDPRHWARLACVCTKFSSLVRDFCWKTKCSLTIPQDLLSAAASDPPLSLHKLSFCCPGLRHAGLLFDTSDFGLERDLGPGNFNVITDDSPSNTTPPPPPPPPQQQQQQPPQSDDCSSSCWSLYDDLYYDTLYVPTESESPRLTESVSVRAGVDVASISACSKKRKLSRAWSSHLASGSWTLSREQGSKLLARKFRYDCLYVCEWPGCVHKEEKRKYCLFRGVFKNFRRTMVWRTIQDGKKRKMDLPCAFCACEFTWDLHSSFCLRPGFGFHDDGEPMVRAYVCENGHVSGAWTDLPIYT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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