Glyma03g37210 - SoyBase

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Report for Sequence Feature Glyma03g37210

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43895421
stop:	43899424
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02860	AT	Annotation by Michelle Graham. TAIR10: SPX (SYG1/Pho81/XPR1) domain-containing protein \| chr1:635474-637083 FORWARD LENGTH=335	SoyBase	E_val: 2.00E-167	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0009626	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010337	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of salicylic acid metabolic process	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0080021	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to benzoic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23041	Panther	RING FINGER PROTEIN 4	JGI		ISS
PTHR23041:SF6	Panther	PUTATIVE RING FINGER PROTEIN	JGI		ISS
PF03105	PFAM	SPX domain	JGI		ISS
UniRef100_B9SAP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SAP8_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JQL7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQL7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g37210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37210

Paralog	Evidence	Comments
Glyma19g39830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g214100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g37210

Limit To All Plant Sequences

>Glyma03g37210.2   sequence type=transcript   gene model=Glyma03g37210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCATTTTCTAAAGATTATTATTGGCACACGTTAAAGTGTTAAACTGTTGGTGTTGGCATACGGAAACGGAGGAATGCAAGTATTCAGAATCGGATATAAGGAAAAAGTTTCGATCCTACACCTTAAACCGAAATCACATTTTTTATTCTTTCTTTCTCAGACTCCTTCACTCTCTGTGTTGCCGTTTCTGTTTCTTGGGCAATTCATCCTAGGGAAAACATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCGGGCGTAGGATTCAAGAAGCTCAAAAAGATATTGAAGAAGTGCAGGAGAAACTCTTCATCCCAGAAACCCCTTCATGCATCCCTTGCCGCCAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTGGGGTGCTTTAATCAGCGTGCTCAGAAATTGTTGGAGCTACATCTCGCTTCTGGGGTCAGAAAGTACTTCTTGTGGATCAAAGGCAAATTACAAGGGAACCATACGGCTCTGATTCAAGAAGGCAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCAATTCGAAAAATACTGAAAAAATACGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCGCAGATCCAGAGTATGCACAAGGAGATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCATATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACATTCAAGGATGGGAAACCGGCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACTTGTTCTATATGCTTGGACACCGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATATTCTGCTATATTTGTGCATGCTCAGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATCCTAAAATGAAGTGTCCTCTATGTCGTGAGGGAGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAATTAAATATTCTGTTAAGCCGAAGCTGTCAGGAATACTGGGAGCAGAGGATTCAGACAGAAAGGGTGGAGAGGGTTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGCGTCTAAGTACAGCATGCAATTTTCTTAGTTTCTTTTGTAGAGTTTAAGATTGGTGGGCTGTCTCGGTTGAAAGTAATGTCCTTGGCTAAGAAATTGTCCATCTGACAGTTAGCTATGGTATGGCCTGCCTCCCCACACAGATCACAAATAGGGGGTGATGGAGCAGGCTACATGAGCTGTGTCTGAGCCTTCATCAGAGTCTCTATCTATTTGGCCATGACATCGAGCTTGCCGGGGCAGTGATGGCTGACTAGAGGCCCCGGTCTCCATTTGGTTCACTCCAACTAGAGCAGGGTATACGTTTAAGTCCGCACTCCAACTAAAACTTTGTCGAAGTCCATGACTGTGGGAGTTCTGAGAGCAATGCTGATGATGGTGCAGGCTGCAAAGTCCTGTCTAATGATCTTTTGAATTACACCATTGGTTTGAGAATCAACAGAAGCAGTTGCCTCATCCATAAACTAGAGCCGGCTTCACTTGAGTATAACCCTCCTAGACAAAGCAACTGTCTCTGCCCCCACACTCCAGTTCTCTCCATTATCTGCCACTGAAAAGTTCAAACAACATTCTCATTAGTAAAATTATGAAACTAAAGTAGCAGCTCAAAGAAATATGCTAAAACTCTCTACCTAAAGAGTCAAGTTTTTCAGGCTTGGCAGCAACAACCTCTTTTAATTGACACCGTTCCAAGCTCTATAGTAATGAAATGTTATTAGACTAATGGTTAAAAATATTCACCAGGCAAGTAAATAGATTTCAATTGGCACATTACTT

Coding sequences of Glyma03g37210

Limit To All Plant Sequences

>Glyma03g37210.1   sequence type=CDS   gene model=Glyma03g37210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCGGGCGTAGGATTCAAGAAGCTCAAAAAGATATTGAAGAAGTGCAGGAGAAACTCTTCATCCCAGAAACCCCTTCATGCATCCCTTGCCGCCAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTGGGGTGCTTTAATCAGCGTGCTCAGAAATTGTTGGAGCTACATCTCGCTTCTGGGGTCAGAAAGTACTTCTTGTGGATCAAAGGCAAATTACAAGGGAACCATACGGCTCTGATTCAAGAAGGCAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCAATTCGAAAAATACTGAAAAAATACGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCGCAGATCCAGAGTATGCACAAGGAGATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCATATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACATTCAAGGATGGGAAACCGGCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACTTGTTCTATATGCTTGGACACCGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATATTCTGCTATATTTGTGCATGCTCAGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATCCTAAAATGAAGTGTCCTCTATGTCGTGAGGGAGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAATTAAATATTCTGTTAAGCCGAAGCTGTCAGGAATACTGGGAGCAGAGGATTCAGACAGAAAGGGTGGAGAGGGTTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGCGTCTAA

>Glyma03g37210.2   sequence type=CDS   gene model=Glyma03g37210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGAGAAGAAGCTTCCGGGCGTAGGATTCAAGAAGCTCAAAAAGATATTGAAGAAGTGCAGGAGAAACTCTTCATCCCAGAAACCCCTTCATGCATCCCTTGCCGCCAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTGGGGTGCTTTAATCAGCGTGCTCAGAAATTGTTGGAGCTACATCTCGCTTCTGGGGTCAGAAAGTACTTCTTGTGGATCAAAGGCAAATTACAAGGGAACCATACGGCTCTGATTCAAGAAGGCAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCAATTCGAAAAATACTGAAAAAATACGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCGCAGATCCAGAGTATGCACAAGGAGATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCATATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACATTCAAGGATGGGAAACCGGCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACTTGTTCTATATGCTTGGACACCGTGTTTGATCCAGTTTCTCTGACTTGCGGCCATATATTCTGCTATATTTGTGCATGCTCAGCTGCATCAGTATCTATTGTTAACGGACTTAAGTCTGCAGATCCTAAAATGAAGTGTCCTCTATGTCGTGAGGGAGCAGTTTATGAAGGTGCTGTGCACTTGGAAGAATTAAATATTCTGTTAAGCCGAAGCTGTCAGGAATACTGGGAGCAGAGGATTCAGACAGAAAGGGTGGAGAGGGTTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGCGTCTAA

Predicted protein sequences of Glyma03g37210

Limit To All Plant Sequences

>Glyma03g37210.1   sequence type=predicted peptide   gene model=Glyma03g37210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRNSSSQKPLHASLAAKTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGVRKYFLWIKGKLQGNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQIQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTFKDGKPALTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVHLEELNILLSRSCQEYWEQRIQTERVERVKQIKEHWDSQCRAFVGV*

>Glyma03g37210.2   sequence type=predicted peptide   gene model=Glyma03g37210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFCKKYQEYMQGQEKKLPGVGFKKLKKILKKCRRNSSSQKPLHASLAAKTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGVRKYFLWIKGKLQGNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQIQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTFKDGKPALTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVHLEELNILLSRSCQEYWEQRIQTERVERVKQIKEHWDSQCRAFVGV*

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