Glyma03g37180 - SoyBase

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Report for Sequence Feature Glyma03g37180

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43880371
stop:	43884446
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g37180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47790	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr2:19571102-19572946 REVERSE LENGTH=392	SoyBase	E_val: 0	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG1188	KOG	WD40 repeat protein	JGI		ISS
PTHR22889	Panther	UNCHARACTERIZED	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7KSP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein-like protein n=1 Tax=Medicago truncatula RepID=G7KSP6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JQL5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQL5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g37180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g37180

Paralog	Evidence	Comments
Glyma19g39790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g37180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g213700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g37180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g37180

Limit To All Plant Sequences

>Glyma03g37180.1   sequence type=CDS   gene model=Glyma03g37180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTTCTTCTCTTCCTCCGCAACTCTAACCTACAGAAACCCAACTTCTGTTCATATGGAAACCAGTGCGGCCATGGATGTCGAGGACCAACCTTCACCCAACTCCAACAACGTTAAACGCTTCGGCCTTAAAAACTCTATCCAAACCAATTTCGGTGATGACTATGTTTTCCAAATCGTCCCAAAGGAAGATTGGAGTGCAATGGCGGTGTCACTGTCAACGAACGCAGTGAAACTCTATTCACCTGTGGCGGGTCAGTATTTTGGAGAGTTCAAGGGTCACTCTGAAACCGTCAATCAGATTTCGTTTTCGGGTCCTTCAAATCCCCATATTTTGTGTTCGTGTTCTTCTGATGGCACCATTAGAGCTTGGGACGCTCGGACATTTCAGCAGGTTTCTTCTATCAATGCTGGTCCTTCTCAGGAGGTTTTCAGCTTCTGTATGGGAGGGACTAGTGGAAATTTAGTTGCCGCCGGGTGTAAATCGCAGGTACTGTTCTGGGATTGGAGAAATATGAAGCAAGTTGCATGCCTGGTGGACTCTCATGTGGATGATGTCACTCAGGTTCATTTTGTCCCTAATGAACGAGGCAAGCTGATTTCTGCTTCCGTAGATGGTTTGATCTGCACATTTGATACTACTGGAGATATCAATGATGATGATCATCTAGAATCAGTGATTAATATGGGGACTTCAATTGCAAAGGTGGGGATTTTTGGAGAGACTTTCCAGAAGCTTTGGTGTTTAACACATATTGAAACCCTGGGTATCTGGAACTGGAAAGATGGTAGCAATGAAGGAAACTTCTTAGATGCTCGTACTTTAGCTTCTGAAAGTTGGAATTTGGATCATGTTGACTACTTCATTGATTGCCACTACTCCAGAGAAGCTGAAAAACTATGGGTGATTGGAGGCACTAATGCTGGTACTATGGGCTACTTTCCTGTAAATTACAAAGGAGTGGCAACGATTGGAGCTGCAGAAGCAATTCTTGAAGGTGGCCACACAAGTGTTATTAGGAGTGTTTTACCCATGTCAACAATTCCTAGTGGACCTACTAATAGTCCTAGCCAAGGCATTTTCGGTTGGACGGGTGGGGAAGATGGTCGGCTATGTTGTTGGCTCTCTGATGATTCCTCTGAATCAAATCAATCTTGGATTTCAAGCACATTGACTATGAAGGCAGAAAGAACTCACAAGAAAAACCGTCATCACCCCTACTAA

Predicted protein sequences of Glyma03g37180

Limit To All Plant Sequences

>Glyma03g37180.1   sequence type=predicted peptide   gene model=Glyma03g37180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFFSSSATLTYRNPTSVHMETSAAMDVEDQPSPNSNNVKRFGLKNSIQTNFGDDYVFQIVPKEDWSAMAVSLSTNAVKLYSPVAGQYFGEFKGHSETVNQISFSGPSNPHILCSCSSDGTIRAWDARTFQQVSSINAGPSQEVFSFCMGGTSGNLVAAGCKSQVLFWDWRNMKQVACLVDSHVDDVTQVHFVPNERGKLISASVDGLICTFDTTGDINDDDHLESVINMGTSIAKVGIFGETFQKLWCLTHIETLGIWNWKDGSNEGNFLDARTLASESWNLDHVDYFIDCHYSREAEKLWVIGGTNAGTMGYFPVNYKGVATIGAAEAILEGGHTSVIRSVLPMSTIPSGPTNSPSQGIFGWTGGEDGRLCCWLSDDSSESNQSWISSTLTMKAERTHKKNRHHPY*

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