SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62770 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:23218858-23221110 REVERSE LENGTH=425 | SoyBase | E_val: 0 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006914 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagy | SoyBase | N/A | ISS |
| GO:0010150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf senescence | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0042594 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to starvation | SoyBase | N/A | ISS |
| GO:0044265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process | SoyBase | N/A | ISS |
| GO:0048102 | GO-bp | Annotation by Michelle Graham. GO Biological Process: autophagic cell death | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0031090 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: organelle membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| GO:0080025 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-3,5-bisphosphate binding | SoyBase | N/A | ISS |
| KOG2111 | KOG | Uncharacterized conserved protein, contains WD40 repeats | JGI | ISS | |
| PTHR11227 | Panther | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES (WIPI)-RELATED | JGI | ISS | |
| PTHR11227:SF18 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7KRU6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WD repeat domain phosphoinositide-interacting protein n=1 Tax=Medicago truncatula RepID=G7KRU6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JQJ8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQJ8_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma03g37030 not represented in the dataset |
Glyma03g37030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g39660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g212100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g37030.2 sequence type=transcript gene model=Glyma03g37030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAAAAGTGAAAAAAACAGTGAGTGATAATTTTGCTTTGCGTGTTTAGCGGGAGAGCGAAGCTGAAGAGAATATTTTTGTTTCTCAAGCCTTCGAAATCCAGCGATCTCTCATTCTTCAATGGCCACCCTCTCCGCATGCGCTTCTCCTCCATGGCCAAACCCTGATTCTCCCAATTCAAATCCAAACCCTAATTTCCTCCCCGACCAATCTCAAACCCTCGACTTCGACTCCCTCATGCCTCCGCAACCCGAATCCCCACCGCCCAACCATCACCACTCCCCCGACGCCTCTCCACCGGAATCCTCCCCGTCGCCGCCGCCTCCGTCGATCCTCTACCTCTCCTTCAACCAGGACCAGGCCTGCTTCGCCGCCGCCGCCGACAACGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGCTCTTCCGGCGCGAGTTCGACGGCGGCGGGATCGGCCACGTGGAGATGCTCTTCCGCTGCAACATCCTCGCCCTCGTCGGCGGCGGGCCTAACCCTCAGTACCCGCCCAACAAGGTCATGATCTGGGACGACCACCAGGGCCGCTGCATCGGCGAGCTCTCATTCCGCGCCGCCGTGCGCGGTGTCCGCCTCCGCCGCGACCGCATCATCGTCGTCGTCGAACAGAAGATCTTCGTCTACAACTTCGCGGACCTCAAGCTCGTGCAGCAGATTGAGACCGTTCCAAACCCTAAGGGGCTCTGCGCGGTTTCGCAGCTGTCCGATTCTCTCGTTCTCGCGTGCCCCGGTTTGCACAAGGGTCAGATTCGCGTGGAGCACTACGCGCAGAAGAAGACCAAGTTCATCTCAGCGCATGATTCCAGAATCGCTTGCTTCGCTCTCACGCTTGATGGACAGTTAATCGCCACCGCCAGCACCAAGGGTACGCTGATTCGGATTTTTGACACTGATCATGGCACGCTTCTTCAGGAAGTGAGAAGAGGTGCGAATGCTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTCAAGGTTAATTCTAGCATCCCCGAGCAGGAAAAGTCACAAAGTTCATCCAATTCAGATGCTGCCATTACCCCATCTAGCTCTTCTCGCTCCTTCATTAAATTGAAAGGGGTGTTGCCCAAGTACTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCACTTACAAGAGGGCTCTCATTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATTATTCTTGCTTCTATAGATGCCAATTTGATCCAGTACATGGAGGGGAGATGACTCAGCTGGAATATCATAACTTTTTAAAGCCAGAACCAGAAACAGCCTTGTGAGACGCGATGAGAAGAAATCCTGAGCGCTTGACATTTCAGCTTAGTTAGGTTATGCAGATATGTATACTGAAGTAACACTGACCTCATTTTATTATTATTACTAACTCAGGGTCGACCTCGTTGCTTCTTCCATTGTAATATTTGTAATTATATAGTTTTCTAATTTTTTTAATAATAAATATTGAGAGCTTTGCTAAAATCTCC
>Glyma03g37030.1 sequence type=CDS gene model=Glyma03g37030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCCTCTCCGCATGCGCTTCTCCTCCATGGCCAAACCCTGATTCTCCCAATTCAAATCCAAACCCTAATTTCCTCCCCGACCAATCTCAAACCCTCGACTTCGACTCCCTCATGCCTCCGCAACCCGAATCCCCACCGCCCAACCATCACCACTCCCCCGACGCCTCTCCACCGGAATCCTCCCCGTCGCCGCCGCCTCCGTCGATCCTCTACCTCTCCTTCAACCAGGACCAGGCCTGCTTCGCCGCCGCCGCCGACAACGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGCTCTTCCGGCGCGAGTTCGACGGCGGCGGGATCGGCCACGTGGAGATGCTCTTCCGCTGCAACATCCTCGCCCTCGTCGGCGGCGGGCCTAACCCTCAGTACCCGCCCAACAAGGTCATGATCTGGGACGACCACCAGGGCCGCTGCATCGGCGAGCTCTCATTCCGCGCCGCCGTGCGCGGTGTCCGCCTCCGCCGCGACCGCATCATCGTCGTCGTCGAACAGAAGATCTTCGTCTACAACTTCGCGGACCTCAAGCTCGTGCAGCAGATTGAGACCGTTCCAAACCCTAAGGGGCTCTGCGCGGTTTCGCAGCTGTCCGATTCTCTCGTTCTCGCGTGCCCCGGTTTGCACAAGGGTCAGATTCGCGTGGAGCACTACGCGCAGAAGAAGACCAAGTTCATCTCAGCGCATGATTCCAGAATCGCTTGCTTCGCTCTCACGCTTGATGGACAGTTAATCGCCACCGCCAGCACCAAGGGTACGCTGATTCGGATTTTTGACACTGATCATGGCACGCTTCTTCAGGAAGTGAGAAGAGGTGCGAATGCTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTCAAGGTTAATTCTAGCATCCCCGAGCAGGAAAAGTCACAAAGTTCATCCAATTCAGATGCTGCCATTACCCCATCTAGCTCTTCTCGCTCCTTCATTAAATTGAAAGGGGTGTTGCCCAAGTACTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCACTTACAAGAGGGCTCTCATTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATTATTCTTGGTATGGATGGAAGCTTCTATAGATGCCAATTTGATCCAGTACATGGAGGGGAGATGACTCAGCTGGAATATCATAACTTTTTAAAGCCAGAACCAGAAACAGCCTTGTGA >Glyma03g37030.2 sequence type=CDS gene model=Glyma03g37030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCCTCTCCGCATGCGCTTCTCCTCCATGGCCAAACCCTGATTCTCCCAATTCAAATCCAAACCCTAATTTCCTCCCCGACCAATCTCAAACCCTCGACTTCGACTCCCTCATGCCTCCGCAACCCGAATCCCCACCGCCCAACCATCACCACTCCCCCGACGCCTCTCCACCGGAATCCTCCCCGTCGCCGCCGCCTCCGTCGATCCTCTACCTCTCCTTCAACCAGGACCAGGCCTGCTTCGCCGCCGCCGCCGACAACGGCTTCCGCATCTACAACTGCGACCCCTTCCGCGAGCTCTTCCGGCGCGAGTTCGACGGCGGCGGGATCGGCCACGTGGAGATGCTCTTCCGCTGCAACATCCTCGCCCTCGTCGGCGGCGGGCCTAACCCTCAGTACCCGCCCAACAAGGTCATGATCTGGGACGACCACCAGGGCCGCTGCATCGGCGAGCTCTCATTCCGCGCCGCCGTGCGCGGTGTCCGCCTCCGCCGCGACCGCATCATCGTCGTCGTCGAACAGAAGATCTTCGTCTACAACTTCGCGGACCTCAAGCTCGTGCAGCAGATTGAGACCGTTCCAAACCCTAAGGGGCTCTGCGCGGTTTCGCAGCTGTCCGATTCTCTCGTTCTCGCGTGCCCCGGTTTGCACAAGGGTCAGATTCGCGTGGAGCACTACGCGCAGAAGAAGACCAAGTTCATCTCAGCGCATGATTCCAGAATCGCTTGCTTCGCTCTCACGCTTGATGGACAGTTAATCGCCACCGCCAGCACCAAGGGTACGCTGATTCGGATTTTTGACACTGATCATGGCACGCTTCTTCAGGAAGTGAGAAGAGGTGCGAATGCTGCTGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTAGCAGTCTCAAGTGACAAGGGTACTGTCCATGTATTCAGCCTCAAGGTTAATTCTAGCATCCCCGAGCAGGAAAAGTCACAAAGTTCATCCAATTCAGATGCTGCCATTACCCCATCTAGCTCTTCTCGCTCCTTCATTAAATTGAAAGGGGTGTTGCCCAAGTACTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCACTTACAAGAGGGCTCTCATTACACAGTTGCATTTGGTCTCCAAAAGAATACAGTCATTATTCTTGCTTCTATAGATGCCAATTTGATCCAGTACATGGAGGGGAGATGA
>Glyma03g37030.1 sequence type=predicted peptide gene model=Glyma03g37030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLSACASPPWPNPDSPNSNPNPNFLPDQSQTLDFDSLMPPQPESPPPNHHHSPDASPPESSPSPPPPSILYLSFNQDQACFAAAADNGFRIYNCDPFRELFRREFDGGGIGHVEMLFRCNILALVGGGPNPQYPPNKVMIWDDHQGRCIGELSFRAAVRGVRLRRDRIIVVVEQKIFVYNFADLKLVQQIETVPNPKGLCAVSQLSDSLVLACPGLHKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQLIATASTKGTLIRIFDTDHGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSIPEQEKSQSSSNSDAAITPSSSSRSFIKLKGVLPKYFNSEWSVAQFHLQEGSHYTVAFGLQKNTVIILGMDGSFYRCQFDPVHGGEMTQLEYHNFLKPEPETAL* >Glyma03g37030.2 sequence type=predicted peptide gene model=Glyma03g37030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATLSACASPPWPNPDSPNSNPNPNFLPDQSQTLDFDSLMPPQPESPPPNHHHSPDASPPESSPSPPPPSILYLSFNQDQACFAAAADNGFRIYNCDPFRELFRREFDGGGIGHVEMLFRCNILALVGGGPNPQYPPNKVMIWDDHQGRCIGELSFRAAVRGVRLRRDRIIVVVEQKIFVYNFADLKLVQQIETVPNPKGLCAVSQLSDSLVLACPGLHKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQLIATASTKGTLIRIFDTDHGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSIPEQEKSQSSSNSDAAITPSSSSRSFIKLKGVLPKYFNSEWSVAQFHLQEGSHYTVAFGLQKNTVIILASIDANLIQYMEGR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
