SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma03g36970

Feature Type:gene_model
Chromosome:Gm03
Start:43771703
stop:43780189
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02560AT Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein | chr4:1123656-1128252 REVERSE LENGTH=953 SoyBaseE_val: 2.00E-167ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
PTHR12506Panther PROTEIN PHOSPHATASE RELATED JGI ISS
PTHR12506:SF12Panther LD (LUMINIDEPENDENS), TRANSCRIPTION FACTOR JGI ISS
PF00046PFAM Homeobox domain JGI ISS
UniRef100_G7KRT5UniRef Annotation by Michelle Graham. Most informative UniRef hit: LUMINIDEPENDENS-like protein n=1 Tax=Medicago truncatula RepID=G7KRT5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E463UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E463 related cluster n=1 Tax=unknown RepID=UPI000233E463 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g39620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g211500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g36970.2   sequence type=CDS   gene model=Glyma03g36970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCGTGGAACGAAGATTTTTCGGAGCTGGAGATTGGGAGCTCCACTGAATCGTTCCAGAAGTTTTTGGTTTCGCAGAGAGAGCTTTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACGCAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAGGAAATGGCAGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCGAGGGATTTATTGAATCCAAAGGCTGTAAATTACATGCAATCTGTTTTTTCCATTAAAGATGCTATTAGCAAGAAGGAATTGCGCGAGATTAGTGCTTTACTCGGTGTTACAGTGACACAGGTGCGTGACTTTTTCAATGCTCAACGTTCAAGAGTGAGGAGATCCGTGCAGTTGTCAAGGGAGAGGGCACTGAGTTCTAATTCTTGTGAAGAACCTCATGATGATCAAATAAACTCTGATCCTATGAGACCAATAAATCCAACTCCCTTAAACTCTGCTGGCCTGTCCAATACTGAAGAAGCATCTTGTTCAACACAGGAAGTGACTTTGTCTGACCTAGATGACTCAGATAAACAATTTGTTGATAGCATTTTTAGTTTAATGCAAAAAGAGGAGACATTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACGATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATGAATTTAGCAACTTGGTTGAGCAAGGCAGCTGTTGAAGAGCAAACAAGTGTCCTTCTTCTTGTTTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCTGTTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTACGGTTCTACAGGACATCAGACATATCAAACAGGGCAAGGGTTTTGTTGTCAAAGTGGAGCAAACTATTTGCAAGGAACCATGTAATAAAGAAGCCCAATGGTGTTAAGACTTCTAGTGATGGTCATAAAGAGATGATGCTTTCTCGGAGTATTGGTCAACTTATGGGCTCTGAATCATGGCATTCAAATATTGATGTTCCTGAAGACATTCTTGCTCTCTCAAGTGAATGTTCGAATAATTTCAGGAAAATAGGATCTCCACAAGGTGTGAAATTGTTGCCTCCCAGCTTGGATAATTCTAATAAAAAGTCCACTCTTGGTGTATCTTCATCTCAATCTAGAGAACGCAGAAAAGTGCAATTGGTGGAACAGCCGGGCCAAAAGTCAGTGAGCAGAAGCTCACAAGTGACGAGAGCAGGGCCTGTAAGTCAAGGCCGTCCCATGTCTGCTGATGATATTCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAGTAAGTATGGGAAATCTGGTTCAAAAGAGAGTAGCGAAACAAAAATTGATAGCCCATATAAACAACCTCAGACAAACCCCGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCACCCAAAATTGAAGAAAACGAGAAACCTTTGTTACTTGCCTCTAAAGCCACTAATAAGCTGGAAGCTTCTTATTCAAAACCAAAAATGGATGTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTTCAGATCCCATGGAAAACACCAGCAGAAGTGGAACTTAAAGATACCTGGAGAGTTGGTGGCGGTGAAAATAGCAAAGAGGTTGAGGTCCAGAGAAACAGAAACCGCAGGGATAAGGAAATTATATACAAAACTGTCCAAGAGATGCCACCTAACCCCAAGGAGCCTTGGGACCTTGAAATGGACTATGATGATACTTTGACGTTGGAAATCCCTATTGAACAGCTACCAGATGGTGATGCAGATATAGCAATTTCCCCCAATCATGTTGCAACTCATAGTGTTCAAGGGGTGGCCTCCACTTCTTCAACCAGTGTGGCTACTGCTGAACCTGATTTAGAATTGCTTGCTGTGCTGTTAAAAAATCCAGAGTTGGTGTTTGCCTTAACTTCTGGACAAGGTGGTAGCATACCGAGCGAAGAAACCGTGAAGCTGCTTGACATGATCAAGAGTGGAGGTGTGAACTTGGGTTTAAGTGAAAATACAAATGGAAGTTATGGCACGAGTGTAAAGGCCCCGGAGAAGGTGGAAGTTTCTCTTCCATCTCCAACCCCCTTAAGCGATCCAAGAACGAGTGGATGGAGCTCAGAAGCATCAAAAAATCCCTTTTCAAGGCAAAGTCTAGCACCCGATAGAATTACACAGAAACATACTGCAGTGGCAACTACCAACTTATTATCTCAGATTCCTATAACTGTCACTACAGTAAGGCAACAACCAACAGTTGTGGTTCCATCTTCGAGGCATCTTACAAGCATATCAGTTTCTCCATATTCACTGCCTCAAGCAACTAATGTTATTCCTGAAAAGCCACCGCCCCTGGGGCATGTACAAACATCCTCAGATGTAGGTTTAACCATGAAGAAGAACTTAATCACTGCAAATGCATCTTCAGTTAACTTTACTGGCACACATTCAACTCTAGCAATGCGGGGTGATGGCACCAATTATGTAAAACCTGTACCTAATTTGAGTGTGCAACATGAGGGTTTGTCTAATTCATTCCCACAACCCTTCATGCCACCCTCACCAACACCATCCCATTCAGCCTCACAGCAACAAAGACATCAACATTTGGCCCAGGAAGTCCATTACACTGAACCTCCATATCGTAACCCTGGCCGTTCCTACCCGCCACAAATCGAAAAATCAGATCACGGGTCTGATAATATGTGGAGAGTTAGGCAGGATCATGTGTCATCTAGTTATCTTTCTCAACGAAACCATAACAACAACTATAACACAATTGTTGGGGGATCCAGACAATCTGGTTTTTATGATAGAAATAATCATGCAAGGGGAGAATTTGAATCATGGAGTCCGGAAAATAGTCCAACTAGAAATCCTAGGTATGCACCAGGTAGAAATTACCCAGAGTCCAGAATGAATCATGGTAGAAATCATAGACCTGAATGGTCAAGGCAGAGGGGTTCTTCTGGACACTGGGACCCTGGCAGACAGGGAAACAGAAAGTGGCATGATCAGAGACGATGA

>Glyma03g36970.2   sequence type=predicted peptide   gene model=Glyma03g36970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAWNEDFSELEIGSSTESFQKFLVSQRELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKELREISALLGVTVTQVRDFFNAQRSRVRRSVQLSRERALSSNSCEEPHDDQINSDPMRPINPTPLNSAGLSNTEEASCSTQEVTLSDLDDSDKQFVDSIFSLMQKEETFSGQEKLMEWILTIQNFSVLLWFLSRGGGMNLATWLSKAAVEEQTSVLLLVLKVLCHLPLHKAVPMHISAILQSVNKLRFYRTSDISNRARVLLSKWSKLFARNHVIKKPNGVKTSSDGHKEMMLSRSIGQLMGSESWHSNIDVPEDILALSSECSNNFRKIGSPQGVKLLPPSLDNSNKKSTLGVSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGPVSQGRPMSADDIQKAKMRALFMQSKYGKSGSKESSETKIDSPYKQPQTNPASIAACSSKVPTPPKIEENEKPLLLASKATNKLEASYSKPKMDVKEPLWEKCKRVQIPWKTPAEVELKDTWRVGGGENSKEVEVQRNRNRRDKEIIYKTVQEMPPNPKEPWDLEMDYDDTLTLEIPIEQLPDGDADIAISPNHVATHSVQGVASTSSTSVATAEPDLELLAVLLKNPELVFALTSGQGGSIPSEETVKLLDMIKSGGVNLGLSENTNGSYGTSVKAPEKVEVSLPSPTPLSDPRTSGWSSEASKNPFSRQSLAPDRITQKHTAVATTNLLSQIPITVTTVRQQPTVVVPSSRHLTSISVSPYSLPQATNVIPEKPPPLGHVQTSSDVGLTMKKNLITANASSVNFTGTHSTLAMRGDGTNYVKPVPNLSVQHEGLSNSFPQPFMPPSPTPSHSASQQQRHQHLAQEVHYTEPPYRNPGRSYPPQIEKSDHGSDNMWRVRQDHVSSSYLSQRNHNNNYNTIVGGSRQSGFYDRNNHARGEFESWSPENSPTRNPRYAPGRNYPESRMNHGRNHRPEWSRQRGSSGHWDPGRQGNRKWHDQRR*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo