Report for Sequence Feature Glyma03g36930
Feature Type: gene_model
Chromosome: Gm03
Start: 43729133
stop: 43735083
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g36930
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G03000 AT
Annotation by Michelle Graham. TAIR10: peroxin 6 | chr1:688057-692453 REVERSE LENGTH=941
SoyBase E_val: 0 ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
KOG0736
KOG
Peroxisome assembly factor 2 containing the AAA+-type ATPase domain
JGI ISS
PTHR23077 Panther
AAA-FAMILY ATPASE
JGI ISS
PTHR23077:SF9 Panther
PEROXISOME ASSEMBLY FACTOR-2 (PEROXISOMAL-TYPE ATPASE 1)
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
UniRef100_E9NZU9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AAA-family ATPase n=1 Tax=Phaseolus vulgaris RepID=E9NZU9_PHAVU
SoyBase E_val: 0 ISS
UniRef100_I1JQI8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JQI8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g36930
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g36930
Paralog Evidence Comments
Glyma19g39580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g36930 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g211100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g36930
Coding sequences of Glyma03g36930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g36930.2 sequence type=CDS gene model=Glyma03g36930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTGTTTTTCCTTCTTGTGATTTCCCTTCTAATGGTTCTGTGTTAGATGATCAAGTAGCTTATATATCTCCTCTTTTAGCATTTAACCTTAACTTGCACGTGACGTGCTTAAAATCTATTTTTCACCACGGGCAAGATGCTTTAGTTTCTTATTTCAAAAGAGGTGATGAGGATGCTGCTAAAGGAACGGTGGATTCTGTTATCAACGTTGAATTGGAACCACTTGCTCAGCCTCCAAAATTTGCCACTCTTCTGAGGGTTTCTTTTGTTAAGATACCAGAATGTGGCATCCTTGAATCCATTAGAGCAAGTTCGCCTGTTGAGTCTCAAGAGCGGCAGGACATGATCGACTTGGCGTTAAACATGTCAGGTTGGTTGCTAGAGTGTAACTTATGTCTTCAGGTTGTTGGTATGGAACCATCAGATGAACCGTTTTCGGGAGTTAGTTCTCCGTCCGCACTTCCTCCGGATTTGTTGATTGGTGGACCAGCAGAAGAACCCGTGCCCTTGCAAGGGGACACTGTGAACATCTTGGCTTTGATACTTACACCAACTTTTTGTCCATTGGTGCTTTCTTCCAAGTTTAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGTTGCGGGGAAAGTACTGTTGTTAGATATGTTGCTCCACAAGCTTTCAAGATGGCTCGAAGATACTCGCCAGCAATACTTCTTCTTTGTCATTTTGGTGTTTTTCATGATTCACAATCGCCTGAGGTTTCACCACATGACCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTGGAGAAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTGTTGGTTGCTGCTGCTGACAGTTCAGAAGGTCTGCCTCCAACTATCAGACGCTGTTTTAGCCATGAAATAAGCATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCCGGACTCCTCTCTAATACTGATTCAGAAGCTTTAGTAAAAGAAATAGTTGGACAGACATCTGGTTACATGCCCAGGGATATATGTGCTTTGATTGCAGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAGACAAAGATGTGCCTGATGATGTAGGTAGTTCCTTAAGTTCCAAGGTGGCAGAGGACAACAATCAACGGAAAGTTTCACCTCTGATTACTGGGAAAGAAGACTTGTTGAATGCTCTGGAACGATCAAAGAAAAGAAATGCATCAGTGTTGTGTACTCCAAAGGTTCCGAATTTGAAATGGGAAGATGTTGGTGGGCTTGAAGATATCAAAAAGTCAATCCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAACGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCAGCATGTCCATGTGTCATCTTCTTTGATGAGTTTGATTCTCTTGCACCAGCTCGGGGTGCTTCTGGAGATTCTGGGAGCGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCTTAAGTGATTCAACACAGACCCGGCGTCGATTTGATAAACTGCTATATGTTGGAGTTAACTCTGATGCATCTTACAGGGAGCAGGTCCTGAAAGCTCTTACCCGAAAGTTTAAATTGCATGAAGATGCCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTTACTGGTGCAGACATGTATGCTTTGTGTGCAGATGCTTGGTTCTATGCTGCAAAGCGCAAAGTTTTGAGTGAAAATTCGGAGTCTTCCAGCCAAGACAATGAAGCAGATTCTGTTGTTGTTGAATACAATGATTTTGTCCGGGTCTTAGAAGAACTGTCGCCTTCCCTCTCGATGTCCGAGCTCAAGAAGTACGAGCAAATGAGAGATCAGTTTGAAGGCACCTCTAAATGA
Predicted protein sequences of Glyma03g36930
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g36930.2 sequence type=predicted peptide gene model=Glyma03g36930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLVFPSCDFPSNGSVLDDQVAYISPLLAFNLNLHVTCLKSIFHHGQDALVSYFKRGDEDAAKGTVDSVINVELEPLAQPPKFATLLRVSFVKIPECGILESIRASSPVESQERQDMIDLALNMSGWLLECNLCLQVVGMEPSDEPFSGVSSPSALPPDLLIGGPAEEPVPLQGDTVNILALILTPTFCPLVLSSKFRVSVLLYGLAGCGESTVVRYVAPQAFKMARRYSPAILLLCHFGVFHDSQSPEVSPHDQRGNTSEVASVIRKFTEPVEKKNAEKTSGHQVLLVAAADSSEGLPPTIRRCFSHEISMGPLTEEQRAEMLFQSLQSVSGLLSNTDSEALVKEIVGQTSGYMPRDICALIADAGANLFPRNNAKVDKDVPDDVGSSLSSKVAEDNNQRKVSPLITGKEDLLNALERSKKRNASVLCTPKVPNLKWEDVGGLEDIKKSILDTVQLPLLHKDLFSSGLRNVKGPELINMYIGESEKNVRDIFQKARSACPCVIFFDEFDSLAPARGASGDSGSVMDRVVSQMLAEIDGLSDSTQTRRRFDKLLYVGVNSDASYREQVLKALTRKFKLHEDASLYSIAKKCPPNFTGADMYALCADAWFYAAKRKVLSENSESSSQDNEADSVVVEYNDFVRVLEELSPSLSMSELKKYEQMRDQFEGTSK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
