SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62910 | AT | Annotation by Michelle Graham. TAIR10: Peptide chain release factor 1 | chr3:23257661-23260386 REVERSE LENGTH=422 | SoyBase | E_val: 0 | ISS |
| GO:0006415 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translational termination | SoyBase | N/A | ISS |
| GO:0006783 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process | SoyBase | N/A | ISS |
| GO:0009658 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast organization | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0032544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid translation | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation release factor activity | SoyBase | N/A | ISS |
| KOG2726 | KOG | Mitochondrial polypeptide chain release factor | JGI | ISS | |
| PTHR11075 | Panther | PEPTIDE CHAIN RELEASE FACTOR | JGI | ISS | |
| PTHR11075:SF13 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00472 | PFAM | RF-1 domain | JGI | ISS | |
| PF03462 | PFAM | PCRF domain | JGI | ISS | |
| UniRef100_E9NZU4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptide chain release factor n=1 Tax=Phaseolus vulgaris RepID=E9NZU4_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JQI6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQI6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g36900 not represented in the dataset |
Glyma03g36900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g39550 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g210800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g36900.1 sequence type=CDS gene model=Glyma03g36900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTACGTGCCTTCCGCTTCTCTATCCGGTTACTCTGTGGCGATGAACAGCTTAACGGCGAGTTTCACAGCTCGAATATGCGCCACGCGCCGCGACCTACTACTCCCTATACGACACCGTTCCCTTCATCCTTTCACTACCAGACGCGTCGCCACCAAACTCACTCCTCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATAACGAAGCTTGAGTCCGCCGAGAAAACGTGGAAAGAGTTATCGGTCAAGCTTGCTGATCCAGACGTAGTTTCTGATCCAAAGGAGTACCAGAAGTTAGCACAATCAGTTTCAGAGCTTGATGAGGTTGTGTCCACGTATAGGAGATTTAAAGACTGTGAGAAGGTTCTAGAAGAAACCAAAGCTTTAGCGAAGGATGATGGCAACGATGAGGATATGGTGGAAATGATATCTTTTGAAATTGACACTTTGTCCAAGCAACTCGCGGAGCTTGAGGAAAAAATTAAGGTGTTACTGCTTCCCAGTGATCCTATGGATGCTAGAAACATATTGCTTGAAGTACGAGCAGGCACTGGTGGTGACGAGGCCGGAATATGGGCTGGTGATCTTGTTCGAATGTATGAAAGATATAGTGAAAGGAATTCTTGGAAGTATTCTCTTGTCTCAAGCTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAAATAAAGGGAAATCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGGGTTCCCCTAACAGAAACTCAGGGCCGGGTACATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTCGTAATTGACCCAAAAGATATTGAACTGACAACGGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACAGCCATTGATCTCTTCCATAAACCAACGGGAATCCGTATCTTTTGTACTGAAGAAAGGACACAACTTAAGAACAGGAATCGCGCTTTTCAGTTGCTCCGAGCAAAACTATATGAGATTAAGGTAAGGGAGCAACAGGAGTCATTACGAAATCAAAGGAAATTACAGGTCGGTACAGGTGCACGTTCAGAAAAAATTCGAACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAGATAAACTATGAGCTCACCTCTTTTCTTGATGGTGATATAGAAGATGCTGTTCAGTCTTGTGTTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCTGTGGGTGCTCCGGCTGGCTGA
>Glyma03g36900.1 sequence type=predicted peptide gene model=Glyma03g36900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MYVPSASLSGYSVAMNSLTASFTARICATRRDLLLPIRHRSLHPFTTRRVATKLTPPRIVCMAEPYLITKLESAEKTWKELSVKLADPDVVSDPKEYQKLAQSVSELDEVVSTYRRFKDCEKVLEETKALAKDDGNDEDMVEMISFEIDTLSKQLAELEEKIKVLLLPSDPMDARNILLEVRAGTGGDEAGIWAGDLVRMYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLKNRNRAFQLLRAKLYEIKVREQQESLRNQRKLQVGTGARSEKIRTYNYKDNRVTDHRLKINYELTSFLDGDIEDAVQSCVTMEQKELLEELAESVGAPAG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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