SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24990 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin family protein | chr4:12849973-12851249 REVERSE LENGTH=118 | SoyBase | E_val: 6.00E-39 | ISS |
| GO:0010286 | GO-bp | Annotation by Michelle Graham. GO Biological Process: heat acclimation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| UniRef100_E9NZT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UV excision repair protein n=1 Tax=Phaseolus vulgaris RepID=E9NZT7_PHAVU | SoyBase | E_val: 4.00E-60 | ISS |
| UniRef100_I1JQH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQH7_SOYBN | SoyBase | E_val: 2.00E-82 | ISS |
|
Glyma03g36830 not represented in the dataset |
Glyma03g36830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g39470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g210000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g36830.3 sequence type=transcript gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATCATAAAAATCCAAAAATGCGACCATGCAATGGCACATTGTGTCTTTGGTCCATGCATGGGTGGTTTAACAGGGTAAGAGTGGTTGTATTTGTGAATCCGTACCGTCAGTTGGTTCATTCAACAACCCTTGTTGTGTTTTTCTTTTTATCTTTTTATAGTTACAATTTTAACAAGCCATCGTAGCCACAAACGTAGTAAAGAAACGAAGCAAACAGATCTCTCTCTAATATACACTATCACATGTCACTGATCTTCCATTGATGGCTTCTTGATCAGGTGAACAAGGCAAGACTAAATCCTTTGATCCAAGGAAGCACTGTTTTGCTATTGCATAAGCTTGGCGGAGGTGGACACAAGCTATCATGGCTAAAGGCGAGGGACGTATTGAGCTTAAATTCCGCATATATGATGGAACTGATATAGCACATAGTACATATTCTTCATCTACCACAGTTGGTACCCTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGCAAACCAGTTACACCAATGTCTGTAAGTGACCTAAAACTTATACATGCTGGTAAAGTTTTGGAAAACAACAAAACTCTTGCTGATTCCAGAATAACGTTTGGTGACATCCCTGGGGATGTTGTTACAATGCATGTTGTAGTACAACCTCGAGTAACTAAAAAGAAAACAGAGAAGAATAAGGAGAACAATCAAAAGATGAATTCATGCTCATGCACTATACTTTAGTTTAGGAAGCATACATCATGGTTGCACTTGAAGATAAGGTTACATTTTTCCTATTTTTAACGCTGCGAATGATGGGTAGCCAGTGCCTATCCAATACCTTGTGGTCACCTTTTTAAGACATGTTTGCTTCTGTTAATGTTCAATTCATTTCTCTGTTATTGTCTTCGGAGTGAAATCAGATATTAACATTGTAAAATTCGGACTTCAACAAGTACAATAAGAGTGTTGCAGGGCACAAAACATGGCTATACGTGACTAGATCAGGCGGCCCCAACATTCGATGAATGCATACTGTTTGAAAGTAAATAATTTGACAAAACTTGGCCAAGCACCAATTGACATTATTTAATGATTCCTTGATAGATTACATTTGAGTTTAAATTTTATGCAAATGTTT >Glyma03g36830.4 sequence type=transcript gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATCATAAAAATCCAAAAATGCGACCATGCAATGGCACATTGTGTCTTTGGTCCATGCATGGGTGGTTTAACAGGGTAAGAGTGGTTGTATTTGTGAATCCGTACCGTCAGTTGGTTCATTCAACAACCCTTGTTGTGTTTTTCTTTTTATCTTTTTATAGTTACAATTTTAACAAGCCATCGTAGCCACAAACGTAGTAAAGAAACGAAGCAAACAGATCTCTCTCTAATATACACTATCACATGTCACTGATCTTCCATTGATGGCTTCTTGATCAGTGTGATCTGTGGGAATCCGATCTTTCTCTTTGTTTTTGGTCTTGAAATTCCCTATAAGGACGCTGAGAATTATCTCGTAAACATTGTTTGGAGAAGCAATTGGATCATATGAGGTGTTCACTTGGTTGTATCGGTTCTCTAGCAGCCAATTCAGATGTGCAATTTTTGCAAGTTTGCTATAATAAGGAAATTTCCCTCAGAGTCACACAGGTGAACAAGGCAAGACTAAATCCTTTGATCCAAGGAAGCACTGTTTTGCTATTGCATAAGCTTGGCGGAGGTGGACACAAGCTATCATGGCTAAAGGCGAGGGACGTATTGAGCTTAAATTCCGCATATATGATGGAACTGATATAGCACATAGTACATATTCTTCATCTACCACAGTTGGTACCCTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGCAAACCAGTTACACCAATGTCTGTAAGTGACCTAAAACTTATACATGCTGGTAAAGTTTTGGAAAACAACAAAACTCTTGCTGATTCCAGAATAACGTTTGGTGACATCCCTGGGGATGTTGTTACAATGCATGTTGTAGTACAACCTCGAGTAACTAAAAAGAAAACAGAGAAGAATAAGGAGAACAATCAAAAGATGAATTCATGCTCATGCACTATACTTTAGTTTAGGAAGCATACATCATGGTTGCACTTGAAGATAAGGTTACATTTTTCCTATTTTTAACGCTGCGAATGATGGGTAGCCAGTGCCTATCCAATACCTTGTGGTCACCTTTTTAAGACATGTTTGCTTCTGTTAATGTTCAATTCATTTCTCTGTTATTGTCTTCGGAGTGAAATCAGATATTAACATTGTAAAATTCGGACTTCAACAAGTACAATAAGAGTGTTGCAGGGCACAAAACATGGCTATACGTGACTAGATCAGGCGGCCCCAACATTCGATGAATGCATACTGTTTGAAAGTAAATAATTTGACAAAACTTGGCCAAGCACCAATTGACATTATTTAATGATTCCTTGATAGATTACATTTGAGTTTAAATTTTATGCAAATGTTT
>Glyma03g36830.2 sequence type=CDS gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAAAGGCGAGGGACGTATTGAGCTTAAATTCCGCATATATGATGGAACTGATATAGCACATAGTACATATTCTTCATCTACCACAGTTGGTACCCTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGCAAACCAGTTACACCAATGTCTGTAAGTGACCTAAAACTTATACATGCTGGTAAAGTTTTGGAAAACAACAAAACTCTTGCTGATTCCAGAATAACGTTTGGTGACATCCCTGGGGATGTTGTTACAATGCATGTTGTAGTACAACCTCGAGTAACTAAAAAGAAAACAGAGAAGAATAAGGAGAACAATCAAAAGATGAATTCATGCTCATGCACTATACTTTAG >Glyma03g36830.3 sequence type=CDS gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAAAGGCGAGGGACGTATTGAGCTTAAATTCCGCATATATGATGGAACTGATATAGCACATAGTACATATTCTTCATCTACCACAGTTGGTACCCTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGCAAACCAGTTACACCAATGTCTGTAAGTGACCTAAAACTTATACATGCTGGTAAAGTTTTGGAAAACAACAAAACTCTTGCTGATTCCAGAATAACGTTTGGTGACATCCCTGGGGATGTTGTTACAATGCATGTTGTAGTACAACCTCGAGTAACTAAAAAGAAAACAGAGAAGAATAAGGAGAACAATCAAAAGATGAATTCATGCTCATGCACTATACTTTAG >Glyma03g36830.4 sequence type=CDS gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAAAGGCGAGGGACGTATTGAGCTTAAATTCCGCATATATGATGGAACTGATATAGCACATAGTACATATTCTTCATCTACCACAGTTGGTACCCTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGCAAACCAGTTACACCAATGTCTGTAAGTGACCTAAAACTTATACATGCTGGTAAAGTTTTGGAAAACAACAAAACTCTTGCTGATTCCAGAATAACGTTTGGTGACATCCCTGGGGATGTTGTTACAATGCATGTTGTAGTACAACCTCGAGTAACTAAAAAGAAAACAGAGAAGAATAAGGAGAACAATCAAAAGATGAATTCATGCTCATGCACTATACTTTAG
>Glyma03g36830.2 sequence type=predicted peptide gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKGEGRIELKFRIYDGTDIAHSTYSSSTTVGTLKQKLVAEWPQGKPVTPMSVSDLKLIHAGKVLENNKTLADSRITFGDIPGDVVTMHVVVQPRVTKKKTEKNKENNQKMNSCSCTIL* >Glyma03g36830.3 sequence type=predicted peptide gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKGEGRIELKFRIYDGTDIAHSTYSSSTTVGTLKQKLVAEWPQGKPVTPMSVSDLKLIHAGKVLENNKTLADSRITFGDIPGDVVTMHVVVQPRVTKKKTEKNKENNQKMNSCSCTIL* >Glyma03g36830.4 sequence type=predicted peptide gene model=Glyma03g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKGEGRIELKFRIYDGTDIAHSTYSSSTTVGTLKQKLVAEWPQGKPVTPMSVSDLKLIHAGKVLENNKTLADSRITFGDIPGDVVTMHVVVQPRVTKKKTEKNKENNQKMNSCSCTIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
