SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G62970 | AT | Annotation by Michelle Graham. TAIR10: zinc finger (C3HC4-type RING finger) family protein | chr3:23270636-23272698 FORWARD LENGTH=287 | SoyBase | E_val: 3.00E-134 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1940 | KOG | Zn-finger protein | JGI | ISS | |
| PTHR21319 | Panther | RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1 | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF05495 | PFAM | CHY zinc finger | JGI | ISS | |
| UniRef100_F4IZL5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ring finger and CHY zinc finger domain-containing protein 1 n=2 Tax=Arabidopsis thaliana RepID=F4IZL5_ARATH | SoyBase | E_val: 1.00E-131 | ISS |
| UniRef100_I1JQH4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQH4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g36820 not represented in the dataset |
Glyma03g36820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g209900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g36820.2 sequence type=transcript gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTTCAGGGACTATTTTGCAATTTATCTCGATTCAGAGACCAAATTGACAGCGAGTTACATTTTCAGGGATCACTATTTATCCTATTTGCTTTTCATAATTAAACGTATAAATATATTTTGTAAATCCAATGGTGAAAATCACTGTTAAATAAACCTAATCTTTGTTTAGCTTGTTTTGCACCTTGATGAATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATCTTTTCACATATTTGGTCACAAGTGTTTACAGTGCGGTTCGTATAACACCCGTAGGATTTCGAAACCCAAACAAGAAGGTTTGGGTGTTAGTGGAACCTAATTATAAAATCATCCCAAAATTTCTATTCTATTCTTTACATTTTGTTTTAATCACTTTTGCTTATTTTCCCGATGTAATATCAAAGGGAAATAAAAGGATATACATTATTATTTTGCCGATAGTATTGGCTTATGTTGTGAAATATATTGTGGATGACTTGTGTTACGTGCATGCGATTTGTTCTAGCGCCTTGTCTATTCCATTCAAGGAATTTACACTAAAAAAAAAGATAGAGAATGATATCCTGTATGCTACACCAAAATTCTTGATACTGTCTTCAAGCTTGATGACACTTAGTGCTA >Glyma03g36820.3 sequence type=transcript gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTTCAGGGACTATTTTGCAATTTATCTCGATTCAGAGACCAAATTGACAGCGAGTTACATTTTCAGGGATCACTATTTATCCTATTTGCTTTTCATAATTAAACGTATAAATATATTTTGTAAATCCAATGGTGAAAATCACTGTTAAATAAACCTAATCTTTGTTTAGCTTGTTTTGCACCTTGATGAATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGGTGTGTGGAACTATTATTAAATTTTGTTTTGAAATATTTTTTGTTGGTCTATGTATGACCATGTTTTATGTCTTTGAACTCTAAAGTAATATTCCACATGACTTTCTTGGAGACAAGGAAAATTCATGGGGATAAAACAACTAGGAAATGAGCCTTGGAAGACATTTTGTATCAAATTTTTGCTATGATTGTAATGGTTGGATGGTTGTTGTCATATATAAATAAAATGCAACTAGCATGGTGAGTTGCATATTTGCTTTGAGATAAAATTTAAAATTTCTCTCTGTACATAGGAAAACATGAGGTAATTGTAGTAATTGTCTATTGTGAGGGATGCTTTGGCACCGTAGCTTATTACAAAAAATCACTTTTTGCTTAAGCGGATGGTCCTGGAGAAATCTGTTGTCACTCTTCAACCTTCTGTTTGGGATAAGTGCTTATAAGAACTATTTCTTAGTTTTCTGGTAACTTGTTAATTGATTAGTACATAGGAGAAAATATAATGACAAGACTTCCATGGAGGTTTCATAATAGTCACTGGTGTTACTCAGGATATATAACTAATTGAGTGGCATCTTGGAACAACTTCATTGCTTTATTTGATATTCTTCCTTCATCCTTCC
>Glyma03g36820.1 sequence type=CDS gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGATTGAAGGCGTTCATATGCCTGAGGAGTACAAGTTTGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATCTTTTCACATATTTGGTCACAAGTGTTTACAGTGCGGTTCGTATAACACCCGTAGGATTTCGAAACCCAAACAAGAAGGTTTGGGTGTTAGTGGAACCTAA >Glyma03g36820.2 sequence type=CDS gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGGTTTCAATTCTATGCAATGATTGTAACTCTACCAGCACAGTATCTTTTCACATATTTGGTCACAAGTGTTTACAGTGCGGTTCGTATAACACCCGTAGGATTTCGAAACCCAAACAAGAAGGTTTGGGTGTTAGTGGAACCTAA >Glyma03g36820.3 sequence type=CDS gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCCTGCAACCGAGAAGAGAGAGGATTTTGGGAAGTTGCAGTACGGATGCGAGCACTATAAGAGACGATGCAAAATTCGAGCACCATGCTGCAATCAGATTTTTCCATGTCGTCACTGCCACAACGACGCCGCGAACTCATCTAGCAACCCCGCAGATCGTCATGAACTTGTTAGACGCGATGTTAAGCAAGTTATATGCTCTGTCTGTGATACTGAACAGGAGGTTGCCAAGGTGTGTTCTAGCTGTGGCGTCAATATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGATGATGATACGGATAAAGGACAATTCCATTGTGATGAATGCGGCATTTGCAGGGTTGGTGGTCGTGATAAGTTCTTTCACTGTAAGAAATGTTGTGCTTGCTATTCAGTGAGTGTGCAAAACAATCACTCATGTGTAGAGAACTCAATGAAGAGTTTCTGCCCTATCTGTTTGGAGTACCAATTTGATTCAATAAAAGGCAGCACCATTTTGAAGTGTGGACACACAATGCATATGGAGTGCTATCGAGAGATGGCAACTCAAAATCAGTATCGCTGTCCTATATGCTTGAAGACAATAGTCAATGATATGAACTGGGAATATTTAGATCGAGAGGTGTGTGGAACTATTATTAAATTTTGTTTTGAAATATTTTTTGTTGGTCTATGTATGACCATGTTTTATGTCTTTGAACTCTAA
>Glyma03g36820.1 sequence type=predicted peptide gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPATEKREDFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAANSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSSCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCKKCCACYSVSVQNNHSCVENSMKSFCPICLEYQFDSIKGSTILKCGHTMHMECYREMATQNQYRCPICLKTIVNDMNWEYLDREIEGVHMPEEYKFEVSILCNDCNSTSTVSFHIFGHKCLQCGSYNTRRISKPKQEGLGVSGT* >Glyma03g36820.2 sequence type=predicted peptide gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPATEKREDFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAANSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSSCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCKKCCACYSVSVQNNHSCVENSMKSFCPICLEYQFDSIKGSTILKCGHTMHMECYREMATQNQYRCPICLKTIVNDMNWEYLDREVSILCNDCNSTSTVSFHIFGHKCLQCGSYNTRRISKPKQEGLGVSGT* >Glyma03g36820.3 sequence type=predicted peptide gene model=Glyma03g36820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEPATEKREDFGKLQYGCEHYKRRCKIRAPCCNQIFPCRHCHNDAANSSSNPADRHELVRRDVKQVICSVCDTEQEVAKVCSSCGVNMGEYYCEICKFYDDDTDKGQFHCDECGICRVGGRDKFFHCKKCCACYSVSVQNNHSCVENSMKSFCPICLEYQFDSIKGSTILKCGHTMHMECYREMATQNQYRCPICLKTIVNDMNWEYLDREVCGTIIKFCFEIFFVGLCMTMFYVFEL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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