SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G47980 | AT | Annotation by Michelle Graham. TAIR10: sister-chromatid cohesion protein 3 | chr2:19631423-19636795 FORWARD LENGTH=1098 | SoyBase | E_val: 0 | ISS |
| GO:0000003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reproduction | SoyBase | N/A | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin organization | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009887 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ morphogenesis | SoyBase | N/A | ISS |
| GO:0009888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tissue development | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0010638 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0016558 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051455 | GO-bp | Annotation by Michelle Graham. GO Biological Process: attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation | SoyBase | N/A | ISS |
| GO:0051754 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic sister chromatid cohesion, centromeric | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005694 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromosome | SoyBase | N/A | ISS |
| KOG2011 | KOG | Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 | JGI | ISS | |
| PTHR11199 | Panther | STROMAL ANTIGEN | JGI | ISS | |
| PF08514 | PFAM | STAG domain | JGI | ISS | |
| UniRef100_G8A184 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cohesin subunit SA-3 n=1 Tax=Medicago truncatula RepID=G8A184_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JQF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQF2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g36570 not represented in the dataset |
Glyma03g36570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g207600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g36570.1 sequence type=CDS gene model=Glyma03g36570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGATCCAGCTCCACCATCCGAAGCATCCAATCGCCCCCCTCGTAAGAGGGGCAGACCTCCCAAACACCTCCCCAAGGAACACGACGCCGACGCCGACCGGACCACCGTGCAAGCCGACCGAGAGAGTTCGCCCGACGACTTCGACGAAGCACCCGCTAAATCCAAGAGAAATCGTGCTTCCGAAGGAACCTCCAGCGTCGCGCACAAAGTCTCTGACCAAACCCTAATTGAGGTGGTAAAAGGTAATGGCAAGTTTATTCCCCAGGCAGTCAAGTTTTGGGTTGAATGCTATGAAAAGGATCCAAAACCTGCAATGGTTGATCTCTTGACAATGCTGTTTGAGGCATGTGGAGCCAAGTACTGCGATAAGAGTGATCTTGTGGATGAGACTGATGTTGATGAAGTTGTAATTGCTCTTGTCAACTGTGCTAAAAGGGGTGAAGTTGAAGATTATCAAAATTCCAAAAAGAAAGAGATTAAAAACTTCAAAGAGAATCTAGAATCATTCTGGGACAATTTGGTTCGTGAGTGTCAGCATGGCCCATTGTTTGATCAAGTTTTATTTGACAAGTGCATGGACTATATCATTGCACTGTCATGCACCCCTCCAAGAGTATACCGTCAAGTTGCATCATTGATGGGTCTTAGTCTGGTCACATCATACATAACTATTGCTAATATGCTTCGTGCTCAAAGAGAGACTACTCAGAGACAGTTGGAAGCTGAGAAAAAGAAAAGAACTGAGGGGCCTCGAGTGGATTCACTAAAGAAAAGGTCTTCTGATACTCATGATAGAATACAGTTGTTGGAGGAGATGATGCGCAAGATATTTACTGGGTTATTTGTGCATCGCTACAGAGACATTGACCAAAATATTAGAATGTCATGCATCGAATCGTTGGGTGCATGGATCCTGTCATACCCATCACTTTTCCTGCAGGATTTGTACTTGAAATATCTTGGATGGACGCTGAATGACAAAAATGCTGGTGTAAGAAAGGCTTCTATAAGTGCTCTGCAAAATCTTTATGAGGTGGATGATAATGTGCCAACCCTTGGTTTATTTACTGAAAGATTTTCTAGCCGGATGATTGAGCTTGCTGATGACATTGATGTTTCTGTGGCTGTTCAAGCCATAGGTCTTGTTAAACAATTACTAAGACATCAACTTATTCCTGAAGATGACTTGGGTCCTTTGTATGATTTGTTGATTGATGACCCCCCAGAAATCAGGCATGCCATTGGAGCATTAGTGTATGATCACTTGATTGCTCAAAAATTTAATAGCCTCCAATCAGGATCAAGAGATGAAACTGGCAATACCTCTGAGGTCCATCTAAAGAGAATGTTGCGAATTCTGGAGGAGTTCCCACAAGATCCAATTTTGAGCATTTATGTAATTGATGATGTGTGGGAGTACATGACAGCTATAAAGGATTGGAAGTGCATTATATCCATGCTCCTTGATGAAAGTCCATCAGTTGAGCTCTCTGACAGTGATGCAACAAACTTGGTGCGACTCCTGTGTGCATCCGTGAAAAAGGCTATTGGAGAGAGGATTGTGCCTGCTACAGATAACAGAAAGCATTACTACAACAAAGCCCAGAAAGAAGTATTTGAAAGTAACAAACAGGATATAACTGTTGCCATGATGAAGACTTACCCATTACTCTTGCGAAAATTCATTTCAGATAAAGCAAAAGTCTCATCACTGGTTGAGATTGTTTTGCATATGAACCTTGAATACTATTCCTTGAAGAGGCAGGAACAGAATTTCAAAAATTTACTCCAACTCGTGAAAGAAGCATTTTTTAAGCATGGTGACAAGGACCCTCTTAGGGCTTGTGTGAAGGCTATTGATTTTTGTTGCATAGAAAGTCAAGGGGAATTGCAAGATTTTGCTCGTAATAAATTAAAGGAACTTGAAGATGAAATCATTGCAAAGCTGAAATCCGCTATTAAAGAAGTACTGGATGGTGGTGATGAATATTCTCTTCTTGTAAACTTGAAGAGGTTGTATGAACTCCAACTAAAAAGATCTGTGCCTATCAATAGCCTATATGAAGACATTGTCACGGTGCTACGTGGTAATAGGGATATGGAGGATGAGGTTGTTGGTTTCCTGCTTCTGAACATGTATTTGCATCTGGCTTGGGGTCTACAGTCTATAGTAAATGAAGAAGCTGTTTCTGAAGCATCCTTAAATTCTCTTTTGTCTAAGCGTGATACCTTGTTACAAGAACTTGAATACTTTCTCAACTTGGCTGATGATAACAGGGAAGGGGGTAAATATACAAGTGAACTCGGCTGCAGAGTATGCACTATACTTGCAGAAACATGGTTCTTATTTAGGACAACAAATTTCAACAAGACAAAACTGGAAAAATTAGGATATCAGCCTGACACAGATATGCTTCAGAAGTTCTGGGAACTTTGTCAACAACAGCTTAATATTTCAGATGAGGCAGAAGATGAAGATGTTAATAAAGAGTATGCTGTGGAGACAAATAGAGATGCTGTGATGATTGCTGCTGCAAAGCTGATCGCAAATGATGTTGTTCCAAAGGAGGATCTTGCTTCTGAGATTATTTCACATTTTGTGATGCACGGTACAAGTGTGGCTGAGATTATAAAACATCTGATCACAGTTTTGAAGAAAAAAGATGTTGATTTGGCTAGCATTTTTCTGGAAGCACTTAAAAAGGCATACCATAGGCATCTTGTCAATATGTCTGGAAGTGAGAATGTTTCTTCAGAAAACAACTCTTCCTCAGGATGTAAAGATCTGGCTGCTAAGCTTTCTGGAACATTTATCGGTGTTGCCCGGATCAAACACAGACCTGACATTTTAAAAGTTGTCAGGGATGGTATTGAATATGCTTTTGTAGATGCTCCAAAACAATTGTCATTTCTTGAAGAGGCAGTGCTCCATTTTGTGTCAAAACTGACTGCACCTGATCTATCGGACATCACGAAGGATGTTCAACAGCGAACAACAAATGTCAATACAGACGAGAACCCCAGTGGCTGGCGTCCCTATAAAGTATTTATTGCCAACTTACTAGAAAAATGTGCAAAGAATGAGGGATTTCAAGATGAGAAAGAAGGGGTTTCTGTTAGGCGTAGGGGCCGTCCTCGGAAGAGGCAAAACATACCAGGAAAGAAGCTTTTTGATGAGCAGAGTTCAAGTGAAGATGAGGATTCCATTAGTGCATATGAACAAGATGCACAAGATGAAGGGAAAAGACAAGAGGATGAGGATGACGATGACCGATTGATAAATTCAATCCCATCATCATCCAAGCTTAGGTCACTGGGAGTTTCTAGGGGGGAAAGCAAAGTATCTGCTTCTAGAACATCAGGGGCATCAAGCTAG
>Glyma03g36570.1 sequence type=predicted peptide gene model=Glyma03g36570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDPAPPSEASNRPPRKRGRPPKHLPKEHDADADRTTVQADRESSPDDFDEAPAKSKRNRASEGTSSVAHKVSDQTLIEVVKGNGKFIPQAVKFWVECYEKDPKPAMVDLLTMLFEACGAKYCDKSDLVDETDVDEVVIALVNCAKRGEVEDYQNSKKKEIKNFKENLESFWDNLVRECQHGPLFDQVLFDKCMDYIIALSCTPPRVYRQVASLMGLSLVTSYITIANMLRAQRETTQRQLEAEKKKRTEGPRVDSLKKRSSDTHDRIQLLEEMMRKIFTGLFVHRYRDIDQNIRMSCIESLGAWILSYPSLFLQDLYLKYLGWTLNDKNAGVRKASISALQNLYEVDDNVPTLGLFTERFSSRMIELADDIDVSVAVQAIGLVKQLLRHQLIPEDDLGPLYDLLIDDPPEIRHAIGALVYDHLIAQKFNSLQSGSRDETGNTSEVHLKRMLRILEEFPQDPILSIYVIDDVWEYMTAIKDWKCIISMLLDESPSVELSDSDATNLVRLLCASVKKAIGERIVPATDNRKHYYNKAQKEVFESNKQDITVAMMKTYPLLLRKFISDKAKVSSLVEIVLHMNLEYYSLKRQEQNFKNLLQLVKEAFFKHGDKDPLRACVKAIDFCCIESQGELQDFARNKLKELEDEIIAKLKSAIKEVLDGGDEYSLLVNLKRLYELQLKRSVPINSLYEDIVTVLRGNRDMEDEVVGFLLLNMYLHLAWGLQSIVNEEAVSEASLNSLLSKRDTLLQELEYFLNLADDNREGGKYTSELGCRVCTILAETWFLFRTTNFNKTKLEKLGYQPDTDMLQKFWELCQQQLNISDEAEDEDVNKEYAVETNRDAVMIAAAKLIANDVVPKEDLASEIISHFVMHGTSVAEIIKHLITVLKKKDVDLASIFLEALKKAYHRHLVNMSGSENVSSENNSSSGCKDLAAKLSGTFIGVARIKHRPDILKVVRDGIEYAFVDAPKQLSFLEEAVLHFVSKLTAPDLSDITKDVQQRTTNVNTDENPSGWRPYKVFIANLLEKCAKNEGFQDEKEGVSVRRRGRPRKRQNIPGKKLFDEQSSSEDEDSISAYEQDAQDEGKRQEDEDDDDRLINSIPSSSKLRSLGVSRGESKVSASRTSGASS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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