Glyma03g36500 - SoyBase

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Report for Sequence Feature Glyma03g36500

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43450774
stop:	43452298
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24420	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:8863111-8864883 REVERSE LENGTH=273	SoyBase	E_val: 3.00E-81	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1454	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF13	Panther	BIPHENYL HYDROLASE-RELATED	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9T016	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sigma factor sigb regulation protein rsbq, putative n=1 Tax=Ricinus communis RepID=B9T016_RICCO	SoyBase	E_val: 1.00E-117	ISS
UniRef100_I1JQE4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JQE4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g36500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36500

Paralog	Evidence	Comments
Glyma19g39161	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g206800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g36500

Limit To All Plant Sequences

>Glyma03g36500.1   sequence type=CDS   gene model=Glyma03g36500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAACAGCATGTGGTTATGGAGGAGGCATAGTTGATGCCCTGAATGCTAATTTCTATGGAAATGGTACTCAAACTTTGGTTCTAGCTCACGGATATGGCACTGACCAAACGGTGTGGCGTTATCTTATTCCCTTCCTTGCATGCTACTTCAAGGTGCTGGTTTTCGATTTGCCTTTCGCCCCAAATGTAAGGCCTTCTTCTCTTTATGACCCAAAGAAGTATTCAACCTTTAATGGATATGCTCAGGACTTGGTGTGCCTTCTTGATGAGCTCAATTTGAGCAAAACTATTTACGTGGGTCATTCCATGTCCGCCATGATTGGATGCTTAGCTGCAACAAAGAAACCTCAACTCTTTGAACATCTAGTCCTACTGGCTGGTTCTCCAATGTACTTGAATAAAGAAGGGTACGAAGGAGGGTTCACTAGATCAGAACTGGACAAAATCTTTGAATCAATAAAGCAAAACTTTTCAGGGTGGGCACACAGCTTTGCTCCATACGCTATTAGCGCAAACGATCCTGCTGCAGTTGCAGAATTTGAATGCAGTCTGCTAAGAATGAAACCAGAAGTTGCACTAAGTGTTGCTAAAACAGTGTTTCTAAGTGACCTCAGATGTGTTCTGCCACGAGTTCGTGTGCCAGCTTCCACCATAATTCAGACCAGAAAAGACCCTATTGTTCCTGTAAACGTTTCTTTTTACATGCAGAAAGAATTGGGTTCTCTTTCCAAAGTCATAATTCTAGAAACAGAAGGTCATTTTCCTCAGCTGACAGCTTATCGTTCGTTGTTGCAAGCTCTTAAGGATTCATTGTCTCTGAATTGA

Predicted protein sequences of Glyma03g36500

Limit To All Plant Sequences

>Glyma03g36500.1   sequence type=predicted peptide   gene model=Glyma03g36500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTACGYGGGIVDALNANFYGNGTQTLVLAHGYGTDQTVWRYLIPFLACYFKVLVFDLPFAPNVRPSSLYDPKKYSTFNGYAQDLVCLLDELNLSKTIYVGHSMSAMIGCLAATKKPQLFEHLVLLAGSPMYLNKEGYEGGFTRSELDKIFESIKQNFSGWAHSFAPYAISANDPAAVAEFECSLLRMKPEVALSVAKTVFLSDLRCVLPRVRVPASTIIQTRKDPIVPVNVSFYMQKELGSLSKVIILETEGHFPQLTAYRSLLQALKDSLSLN*

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