Glyma03g36440 - SoyBase

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Report for Sequence Feature Glyma03g36440

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43395396
stop:	43398621
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06590	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:2016713-2018744 FORWARD LENGTH=314	SoyBase	E_val: 5.00E-86	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0034968	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone lysine methylation	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1NAY4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NAY4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2QLZ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q2QLZ2_ORYSJ	SoyBase	E_val: 7.00E-46	ISS

Expression Patterns of Glyma03g36440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g36440 not represented in the dataset	Glyma03g36440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36440

Paralog	Evidence	Comments
Glyma19g39090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g206000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g36440

Limit To All Plant Sequences

>Glyma03g36440.2   sequence type=transcript   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTCTATCCACTGAGCTACAAGCGCTTGCTGAAATTAGCTTGCATAACAGTAATAATATTTATTAAGTATAAATGTGGAGATCCCGCCTAAACGCCTTTTGGATGAAAAATTCGAAAGCATAGTCGCAAAGAGGAAATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGTTTCGGATATTGAGGAGGAGGATGAAGCTGAGGATATACAACATCAAGATCCGGAAGACAAATTAGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTAGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAACTTTGGGCTGTCAGATACATGTCTGGCCATGTTAGCATCTAAAGGTGATTTGTCACCACAAGAACCTGAAAAAGTACAAGAATTTAAGCAGCAACATCAACATGATGCGGACACTGAAGGAAGTAACTTCTTATCTGATGAACAAGACAAGGAGAATATAAAGTCAGCTGAAGCTCCCAGACCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGTCTAACATCATGGGAGGATCTACTTGTAGCTGTTGGTAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTCCTAAAACAAGATCATATTTGCTGCTTCTAGTGCGGATGAACCGATTGGTTGTTGAGACGATTGATGGTTTACTATCGTACAGAGTATTGTAGATACGAGACCCATTGGAGAACTATATTTTTCATCTCCTAGTTCACCTTTTCGTTGGCATTCATATTCCAAGGAGAACGGACCCAGTACACGAACACAGCACATAACTAAATACACATAAACATAATAGTGCCATTGTTTGAAGTGTTTGGGCATCTGGTATTTTTTAAAATTCTCTGCTCCATTCCCTTTTATTTGAGGCTGAGTATGATTGATATCCACATATTCCTTCTATTTGTAACGGCAAAGATTGAATAATCATATTGTTCTGTGTTATTGACGATAATGTAATGTGATGCTTGATCTCGTTGGATAGAATTTTTTTTAGCAAATTACATTAACATCTCTTGTACTTAGGACTTATTATACTCATATCCCCTCAATTAAAATGTTTTTCTTTTGCCTTACCTAAATCATCACAGTCAATAACGTTGTTAAATTTGTAGCGAATTGTCCAAAACGTCCTCTGACTTAACCCTCACAGTCTGCTTCTTCATCTTCATTTGTCTCCTCTTCATCTTCCTTTCTCCACCCTTCACCCTCACCACCGCACCTCCTCCACAATCTTCATCACCGCACCCCTCCACAATAACCATCA

>Glyma03g36440.3   sequence type=transcript   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTCTATCCACTGAGCTACAAGCGCTTGCTGAAATTAGCTTGCATAACAGTAATAATATTTATTAAGTATAAATGTGGAGATCCCGCCTAAACGCCTTTTGGATGAAAAATTCGAAAGCATAGTCGCAAAGAGGAAATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGTTTCGGATATTGAGGAGGAGGATGAAGCTGAGGATATACAACATCAAGATCCGGAAGACAAATTAGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTAGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAACTTTGGGCTGTCAGATACATGTCTGGCCATGTTAGCATCTAAAGGTGATTTGTCACCACAAGAACCTGAAAAAGTACAAGAATTTAAGCAGCAACATCAACATGATGCGGACACTGAAGGAAGTAACTTCTTATCTGATGAACAAGACAAGGAGAATATAAAGTCAGCTGAAGCTCCCAGACCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGTCTAACATCATGGGAGGATCTACTTGTAGCTGTTGGTAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTAGCTCTTTTTCAAATTAGAATCTATTGCAAAATG

>Glyma03g36440.4   sequence type=transcript   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGGAAATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGGTACTTCCAAAAAAATAAAATCTCTATCTGTTTTCTGCTTCGTTAAAATTGAATTTTCTTGAATTAGTTTCGGATATTGAGGAGGAGGATGAAGCTGAGGATATACAACATCAAGATCCGGAAGACAAATTAGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTAGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAACTTTGGGCTGTCAGATACATGTCTGGCCATGTTAGCATCTAAAGGTGATTTGTCACCACAAGAACCTGAAAAAGTACAAGAATTTAAGCAGCAACATCAACATGATG

Coding sequences of Glyma03g36440

Limit To All Plant Sequences

>Glyma03g36440.1   sequence type=CDS   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGTTTCGGATATTGAGGAGGAGGATGAAGCTGAGGATATACAACATCAAGATCCGGAAGACAAATTAGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTAGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAACTTTGGGCTGTCAGATACATGTCTGGCCATGTTAGCATCTAAAGGTGATTTGTCACCACAAGAACCTGAAAAAGTACAAGAATTTAAGCAGCAACATCAACATGATGCGGACACTGAAGGAAGTAACTTCTTATCTGATGGTAATCGAATAATTGCCTGTTTCAAGAGTTTAACCTTAATCATATGGAGACTGTTAATTGAATTCTTTTTTGCTAAAATAAAATTTAGAACAAGACAAGGAGAATATAAAGTCAGCTGA

>Glyma03g36440.2   sequence type=CDS   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGTTTCGGATATTGAGGAGGAGGATGAAGCTGAGGATATACAACATCAAGATCCGGAAGACAAATTAGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTAGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAACTTTGGGCTGTCAGATACATGTCTGGCCATGTTAGCATCTAAAGGTGATTTGTCACCACAAGAACCTGAAAAAGTACAAGAATTTAAGCAGCAACATCAACATGATGCGGACACTGAAGGAAGTAACTTCTTATCTGATGAACAAGACAAGGAGAATATAAAGTCAGCTGAAGCTCCCAGACCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGTCTAACATCATGGGAGGATCTACTTGTAGCTGTTGGTAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTCCTAAAACAAGATCATATTTGCTGCTTCTAGTGCGGATGAACCGATTGGTTGTTGAGACGATTGATGGTTTACTATCGTACAGAGTATTGTAG

>Glyma03g36440.3   sequence type=CDS   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGTTTCGGATATTGAGGAGGAGGATGAAGCTGAGGATATACAACATCAAGATCCGGAAGACAAATTAGATAGTCCGTCTTCTTTCTATGGATCACTCTCCGTCGCCGATTCTAGCTTCAAAAGTTTAGAAGAAGATGCTTTACTTGATGAATCTTTGAGTTTGAAAAACTTTGGGCTGTCAGATACATGTCTGGCCATGTTAGCATCTAAAGGTGATTTGTCACCACAAGAACCTGAAAAAGTACAAGAATTTAAGCAGCAACATCAACATGATGCGGACACTGAAGGAAGTAACTTCTTATCTGATGAACAAGACAAGGAGAATATAAAGTCAGCTGAAGCTCCCAGACCCATCTTAAAGATATTGAAAAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGTCTAACATCATGGGAGGATCTACTTGTAGCTGTTGGTAAGATTAATTCAAGCCTAAGCAAGAAGACCAATGGATGCAGCTACTTCCACCAAGATGAAATTCCTTCATTTGAATTAGGTAGCTCTTTTTCAAATTAG

>Glyma03g36440.4   sequence type=CDS   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATTAGCAGAGAGAGAGAGGAAGAAGACGATGGCGGAGGATCCGGTTTCGAGCTTCTGCAACGCGTTGGCAGCTTTCTGCAACCACCTCCACTCCTCTTCCGATGCTCTCAAACAATCCATTGATCGCCGACCTATTCCTCTCGATTCCGCATCGTCGACCTTCGTGCAATGCCTGAATCGCCGCGTATCGACCGCGAGCGCCGACCTCGACATGCTCGATTCCATGTCCTTCGGCACCGTCTCTTTCGAAGAGCTCCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACTCCGATCTCTTTCAAATCCAAGATCGTCTCCAGAGCTACGGTTATAGTGCTGGTACTTCCAAAAAAATAAAATCTCTATCTGTTTTCTGCTTCGTTAAAATTGAATTTTCTTGA

Predicted protein sequences of Glyma03g36440

Limit To All Plant Sequences

>Glyma03g36440.1   sequence type=predicted peptide   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAERERKKTMAEDPVSSFCNALAAFCNHLHSSSDALKQSIDRRPIPLDSASSTFVQCLNRRVSTASADLDMLDSMSFGTVSFEELLGHCNELYKKNHSDLFQIQDRLQSYGYSAVSDIEEEDEAEDIQHQDPEDKLDSPSSFYGSLSVADSSFKSLEEDALLDESLSLKNFGLSDTCLAMLASKGDLSPQEPEKVQEFKQQHQHDADTEGSNFLSDGNRIIACFKSLTLIIWRLLIEFFFAKIKFRTRQGEYKVS*

>Glyma03g36440.2   sequence type=predicted peptide   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAERERKKTMAEDPVSSFCNALAAFCNHLHSSSDALKQSIDRRPIPLDSASSTFVQCLNRRVSTASADLDMLDSMSFGTVSFEELLGHCNELYKKNHSDLFQIQDRLQSYGYSAVSDIEEEDEAEDIQHQDPEDKLDSPSSFYGSLSVADSSFKSLEEDALLDESLSLKNFGLSDTCLAMLASKGDLSPQEPEKVQEFKQQHQHDADTEGSNFLSDEQDKENIKSAEAPRPILKILKSEFECLPAYMKGLTSWEDLLVAVGKINSSLSKKTNGCSYFHQDEIPSFELGPKTRSYLLLLVRMNRLVVETIDGLLSYRVL*

>Glyma03g36440.3   sequence type=predicted peptide   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAERERKKTMAEDPVSSFCNALAAFCNHLHSSSDALKQSIDRRPIPLDSASSTFVQCLNRRVSTASADLDMLDSMSFGTVSFEELLGHCNELYKKNHSDLFQIQDRLQSYGYSAVSDIEEEDEAEDIQHQDPEDKLDSPSSFYGSLSVADSSFKSLEEDALLDESLSLKNFGLSDTCLAMLASKGDLSPQEPEKVQEFKQQHQHDADTEGSNFLSDEQDKENIKSAEAPRPILKILKSEFECLPAYMKGLTSWEDLLVAVGKINSSLSKKTNGCSYFHQDEIPSFELGSSFSN*

>Glyma03g36440.4   sequence type=predicted peptide   gene model=Glyma03g36440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLAERERKKTMAEDPVSSFCNALAAFCNHLHSSSDALKQSIDRRPIPLDSASSTFVQCLNRRVSTASADLDMLDSMSFGTVSFEELLGHCNELYKKNHSDLFQIQDRLQSYGYSAGTSKKIKSLSVFCFVKIEFS*

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