Glyma03g36410 - SoyBase

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Report for Sequence Feature Glyma03g36410

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43379686
stop:	43382738
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11900	AT	Annotation by Michelle Graham. TAIR10: aromatic and neutral transporter 1 \| chr3:3758523-3760103 FORWARD LENGTH=432	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009624	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nematode	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015173	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aromatic amino acid transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015175	GO-mf	Annotation by Michelle Graham. GO Molecular Function: neutral amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1304	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_B9IIF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aromatic and neutral amino acid transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9IIF6_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1NAY0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NAY0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g36410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36410

Paralog	Evidence	Comments
Glyma19g39060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g205700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g36410

Limit To All Plant Sequences

>Glyma03g36410.2   sequence type=CDS   gene model=Glyma03g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTGGACACAAAGAACAACATCGCATCATCTCCTCTGTTGGAACCTCTGCCTTTGTCGAATTCCAAACGAGCTTCGAAGCTTCAAACGTTGGGAAACATCATAGTCACCGTGGTCGGAACTGGGGTTCTGGGATTGCCCTTCGCTTTTCGGATCGCTGGATGGGTCGCTGGATCGCTCGGGGTTGCCATCGTCGGCATGTCCACCTACTATTGCATGCTCCTTCTTGTTGTGTGCAGAGAAAAATTGGCATCAGAAGAACCACTAGGGGAATCAAGCACTTATGGAGACTTGGGTTATAGGTCCTTTGGAAGCCCGGGTCGGTATTTTACAGAAGTTGTAATTGTGGTAGCACAATTTGCAGGGTCTGTTGCTTATTTTGTATTTATAGGACAAAACCTTTATTCTGTATTCCAAGGCCAGGGACTATCAAAGGCCTCCTACATATTTATGTTGGTACCTGTTGAGATTGGATTGTCTTGGGTAGGTAGCTTATCTGCTTTGGCTCCTTTCAACATTTTTGCTGATGTGTGCAATGTCATAGCCATGGGAATTGTGGTGAAGGAAGATATACAACGGGCCTTCGGGGAGGGATTTTCATTTGGACAAAGGACAATGATCACATCCAACATTGGTGGGTTGCCATTTGCTGCAGGCATGGCTGTTTTTTGTTTTGAGGGGTTTGGAATGACGCTGGCCTTAGAGAATTCTATGCAGGATAAACGTAAATTCCCAATATTGCTGGCTCAGACTTTTGGTGGCATAACTCTTGTGTACATTCTTTTTGGGTTTTGTGGTTACATGGCTTTTGGTGAAGAAACTAGAGACATTGTGACCCTCAATCTCCCTAGGAATTGGTCATCTCTTGCAGTACAGGTAGGATTATGTGTGGGGCTTGCATTCACACTCCCAGTCATGTTTCACCCAATTAATGAGATTGTGGAAGGGAAACTCAAAATCATCCTCAGAAACAATAATGATTCAATGGGACTAGAAAATATGTGCATATACGTTAGCCGGGCGATTGTGGTGGTTGGATTGGCAGTCATAGCTTCATTTGTGCCAGAATTTTCTGTATTTGCCTCATTTGTAGGGAGCACCTTATGTGCAATGCTCTCATTTGTTATGCCAGCCACATTTCACCTAAAGTTATTTGGCTCTTCTCTACCCATCTGGCAAAAAGCCTTGGATTCTATTGTATTATTGTCTGGATTATTTTTCGCATTTTATGGCACCTACAACACAATAGTTGGAGTTTGA

Predicted protein sequences of Glyma03g36410

Limit To All Plant Sequences

>Glyma03g36410.2   sequence type=predicted peptide   gene model=Glyma03g36410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALDTKNNIASSPLLEPLPLSNSKRASKLQTLGNIIVTVVGTGVLGLPFAFRIAGWVAGSLGVAIVGMSTYYCMLLLVVCREKLASEEPLGESSTYGDLGYRSFGSPGRYFTEVVIVVAQFAGSVAYFVFIGQNLYSVFQGQGLSKASYIFMLVPVEIGLSWVGSLSALAPFNIFADVCNVIAMGIVVKEDIQRAFGEGFSFGQRTMITSNIGGLPFAAGMAVFCFEGFGMTLALENSMQDKRKFPILLAQTFGGITLVYILFGFCGYMAFGEETRDIVTLNLPRNWSSLAVQVGLCVGLAFTLPVMFHPINEIVEGKLKIILRNNNDSMGLENMCIYVSRAIVVVGLAVIASFVPEFSVFASFVGSTLCAMLSFVMPATFHLKLFGSSLPIWQKALDSIVLLSGLFFAFYGTYNTIVGV*

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