Glyma03g36390 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma03g36390): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma03g36390): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma03g36390

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43361955
stop:	43373030
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06580	AT	Annotation by Michelle Graham. TAIR10: FAD-linked oxidases family protein \| chr5:2011486-2016473 REVERSE LENGTH=567	SoyBase	E_val: 0	ISS
GO:0051596	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004458	GO-mf	Annotation by Michelle Graham. GO Molecular Function: D-lactate dehydrogenase (cytochrome) activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0008891	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycolate oxidase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0019154	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycolate dehydrogenase activity	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1231	KOG	Proteins containing the FAD binding domain	JGI		ISS
PTHR11748	Panther	D-LACTATE DEHYDROGENASE	JGI		ISS
PTHR11748:SF6	Panther	ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE-RELATED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF02913	PFAM	FAD linked oxidases, C-terminal domain	JGI		ISS
UniRef100_B9SDP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: D-lactate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9SDP2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JQD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQD0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g36390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g36390 not represented in the dataset	Glyma03g36390 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g36390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g205500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g36390

Limit To All Plant Sequences

>Glyma03g36390.2   sequence type=transcript   gene model=Glyma03g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGATGGAATCATACAGAGTAATTAGTGATCCACCATGCCTGTCGGTAGGCCGGTTTTAAATACTATGAGTGAATGAGCTTCTTCGTTTCGTTTGATGTCAACAGCATGTCAAATTTCTCCTCCTGGTACTCTCGTTTTCGTTTTTCGGCCAAGTACTTGTACTGCTACCACCGCACTCTCCACAAAAACGCACCCAGCACCATCTTCAACAACCACGGAACCAGGAAGAACGCATGGCCAACCTCTCTGCTTCCTTTGGCGCTCGCTGTTTCCGCTGGATCACTCGCTCTTCAACCACACTTCAATCCTTCCTTCTGCGACACCGACGACAGAGGTGTGGGTGTTGGGGGCAAAGGCAGCACGCAATACGTTGTTAAGGGATCACAGAAAGAATTTCCGCGGGAGCTTCTTCAGGATTTGAAAATCGTCTGTCAGGATAACATATCTCTTGATTATGATGAAAGATATATCCATGGAAAACCACAAAACAGCTTTCACAAGGCTGTCAATATCCCAGATGTGATTGTTTATCCAAGATCCGAAGAGGAGGTCTCTAAGATTGTCAAATTATGCAACAGTCATAAGGTTCCTATTGTACCATATGGTGGAGCTACATCAATTGAGGGTCACACCTTATCCCCTCATGGAGGAGTTTGCATTGACATGTCATTAATGAAAAGAGTGAAAGAATTACATGTTAATGACATGGATGTTGTTGTTGAGCCTGGCATTGGATGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCCTATTTTTTCCACTTGATCCAGGTCCTGGTGCTAGCATTGGAGGCATGTGTGCTACACGTTGCTCCGGTTCATTAGCTGTGAGGTATGGCACTATGCGTGATAATGTCATCAGTCTCAAGGTGGTTCTTGCCAATGGAGACATTGTGAAGACTGCATCACGTGCTAGGAAGAGTGCTGCAGGGTATGATTTGACCCGCTTGATGATTGGAAGTGAAGGAACACTTGGTGTTATAACAGAAGTAACCCTGCGGCTTCAGAAAATTCCCCAGTATTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACCATGATGTCTGGTATACAGGTGTCAAGGGTAGAGCTATTGGATGAAGTTCAAGTGAAAGCTATCAATATTGCTAATGGGAAGAATTTGCCTGAATGTCCAACTTTAATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAACAAACACAAATTGTTCGGAAACTTGTTTCTGAGCACAATGGCTCAGATTTTGTATTCGCAGAAGAACCTGAAGCAAAAAAAGAACTTTGGAAGGTAAGGAAAGAGGCACTCTGGGCTTGCTTTGCAATGGAACCAAATCTGGTGGCAATGACTACAGATGTATGTGTTCCTTTATCTCACCTTGGCGATTTAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCACCACTAGTTTGTAATTGCGCATGCTGGTGATGGTAATTTCCACACGGTTATTTTATTTGATCCTAACCAAGAAGAACAGCGGCGGGAGGCAGAGAGACTCAACCAGTTTATGGTTCATGCTGCCTTGTCATTAGAAGGAACTTGTACCGGTGAACATGGTGTTGGAACTGGAAAAATGAAGTATCTTGAAGAAGAACTCGGAGTGGAAGCATTGAGGACAATGAAAAAAATAAAAGCAGTCCTAGATCCCAACGATATCATGAATCCAGGAAAGCTCATCCCTCCCCATGTTTGTTTCTAGTAGTACCGTCACTCCAAGAAGCAAGTTTGTAATAAAGCAGTCATGGATAAATTTACAAAACCAACGTATTGCTGTTTCTAACATCAAGCCATATCTGTAGAATACATTTTTTTTTATGAAATAAGGGCATGCTGCTCCATGTAATTTGTTCATTGCATGCTTCAGGCCATTTTAAGTTTCTGGCCTCGTGTCTGAGGAAGTCTATGTAAGAAGCTCAGCAATAACCCTCTTTTTTCTGGCCTTGTGTTATTTTGATTATTAAGATTTTAAAAGGGCTTTAATTCAGTTCATTAAATTTTTAAAGGGTCCAATTTTGATATATTTAAGTTTACCAAAAATTTCACAAACTATCTCGTATTTCCTGTGTATACG

Coding sequences of Glyma03g36390

Limit To All Plant Sequences

>Glyma03g36390.1   sequence type=CDS   gene model=Glyma03g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCTTCGTTTCGTTTGATGTCAACAGCATGTCAAATTTCTCCTCCTGGTACTCTCGTTTTCGTTTTTCGGCCAAGTACTTGTACTGCTACCACCGCACTCTCCACAAAAACGCACCCAGCACCATCTTCAACAACCACGGAACCAGGAAGAACGCATGGCCAACCTCTCTGCTTCCTTTGGCGCTCGCTGTTTCCGCTGGATCACTCGCTCTTCAACCACACTTCAATCCTTCCTTCTGCGACACCGACGACAGAGGTGTGGGTGTTGGGGGCAAAGGCAGCACGCAATACGTTGTTAAGGGATCACAGAAAGAATTTCCGCGGGAGCTTCTTCAGGATTTGAAAATCGTCTGTCAGGATAACATATCTCTTGATTATGATGAAAGATATATCCATGGAAAACCACAAAACAGCTTTCACAAGGCTGTCAATATCCCAGATGTGATTGTTTATCCAAGATCCGAAGAGGAGGTCTCTAAGATTGTCAAATTATGCAACAGTCATAAGGTTCCTATTGTACCATATGGTGGAGCTACATCAATTGAGGGTCACACCTTATCCCCTCATGGAGGAGTTTGCATTGACATGTCATTAATGAAAAGAGTGAAAGAATTACATGTTAATGACATGGATGTTGTTGTTGAGCCTGGCATTGGATGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCCTATTTTTTCCACTTGATCCAGGTCCTGGTGCTAGCATTGGAGGCATGTGTGCTACACGTTGCTCCGGTTCATTAGCTGTGAGGTATGGCACTATGCGTGATAATGTCATCAGTCTCAAGGTGGTTCTTGCCAATGGAGACATTGTGAAGACTGCATCACGTGCTAGGAAGAGTGCTGCAGGGTATGATTTGACCCGCTTGATGATTGGAAGTGAAGGAACACTTGGTGTTATAACAGAAGTAACCCTGCGGCTTCAGAAAATTCCCCAGTATTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACCATGATGTCTGGTATACAGGTGTCAAGGGTAGAGCTATTGGATGAAGTTCAAGTGAAAGCTATCAATATTGCTAATGGGAAGAATTTGCCTGAATGTCCAACTTTAATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAACAAACACAAATTGTTCGGAAACTTGTTTCTGAGCACAATGGCTCAGATTTTGTATTCGCAGAAGAACCTGAAGCAAAAAAAGAACTTTGGAAGGTAAGGAAAGAGGCACTCTGGGCTTGCTTTGCAATGGAACCAAATCTGGTGGCAATGACTACAGATGTATGTGTTCCTTTATCTCACCTTGGCGATTTAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCACCACTAGTTTGCACAGTAATTGCGCATGCTGGTGATGGTAATTTCCACACGGTTATTTTATTTGATCCTAACCAAGAAGAACAGCGGCGGGAGGCAGAGAGACTCAACCAGTTTATGGTTCATGCTGCCTTGTCATTAGAAGGAACTTGTACCGGTGAACATGGTGTTGGAACTGGAAAAATGAAGTATCTTGAAGAAGAACTCGGAGTGGAAGCATTGAGGACAATGAAAAAAATAAAAGCAGTCCTAGATCCCAACGATATCATGAATCCAGGAAAGCTCATCCCTCCCCATGTTTGTTTCTAG

>Glyma03g36390.2   sequence type=CDS   gene model=Glyma03g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTTCTTCGTTTCGTTTGATGTCAACAGCATGTCAAATTTCTCCTCCTGGTACTCTCGTTTTCGTTTTTCGGCCAAGTACTTGTACTGCTACCACCGCACTCTCCACAAAAACGCACCCAGCACCATCTTCAACAACCACGGAACCAGGAAGAACGCATGGCCAACCTCTCTGCTTCCTTTGGCGCTCGCTGTTTCCGCTGGATCACTCGCTCTTCAACCACACTTCAATCCTTCCTTCTGCGACACCGACGACAGAGGTGTGGGTGTTGGGGGCAAAGGCAGCACGCAATACGTTGTTAAGGGATCACAGAAAGAATTTCCGCGGGAGCTTCTTCAGGATTTGAAAATCGTCTGTCAGGATAACATATCTCTTGATTATGATGAAAGATATATCCATGGAAAACCACAAAACAGCTTTCACAAGGCTGTCAATATCCCAGATGTGATTGTTTATCCAAGATCCGAAGAGGAGGTCTCTAAGATTGTCAAATTATGCAACAGTCATAAGGTTCCTATTGTACCATATGGTGGAGCTACATCAATTGAGGGTCACACCTTATCCCCTCATGGAGGAGTTTGCATTGACATGTCATTAATGAAAAGAGTGAAAGAATTACATGTTAATGACATGGATGTTGTTGTTGAGCCTGGCATTGGATGGATGGAGCTTAATGAGTATTTGGAACCTTATGGCCTATTTTTTCCACTTGATCCAGGTCCTGGTGCTAGCATTGGAGGCATGTGTGCTACACGTTGCTCCGGTTCATTAGCTGTGAGGTATGGCACTATGCGTGATAATGTCATCAGTCTCAAGGTGGTTCTTGCCAATGGAGACATTGTGAAGACTGCATCACGTGCTAGGAAGAGTGCTGCAGGGTATGATTTGACCCGCTTGATGATTGGAAGTGAAGGAACACTTGGTGTTATAACAGAAGTAACCCTGCGGCTTCAGAAAATTCCCCAGTATTCAGTGGTTGCAATGTGCAATTTCCCTTCTGTGAAGGATGCAGCAGATGTTGCTATTGCCACCATGATGTCTGGTATACAGGTGTCAAGGGTAGAGCTATTGGATGAAGTTCAAGTGAAAGCTATCAATATTGCTAATGGGAAGAATTTGCCTGAATGTCCAACTTTAATGTTTGAATTTATAGGAACAGAGGCATATGCACGTGAACAAACACAAATTGTTCGGAAACTTGTTTCTGAGCACAATGGCTCAGATTTTGTATTCGCAGAAGAACCTGAAGCAAAAAAAGAACTTTGGAAGGTAAGGAAAGAGGCACTCTGGGCTTGCTTTGCAATGGAACCAAATCTGGTGGCAATGACTACAGATGTATGTGTTCCTTTATCTCACCTTGGCGATTTAATTTCAAGGTCTAAAAAGGAGCTGGATGCATCACCACTAGTTTGTAATTGCGCATGCTGGTGA

Predicted protein sequences of Glyma03g36390

Limit To All Plant Sequences

>Glyma03g36390.1   sequence type=predicted peptide   gene model=Glyma03g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFVSFDVNSMSNFSSWYSRFRFSAKYLYCYHRTLHKNAPSTIFNNHGTRKNAWPTSLLPLALAVSAGSLALQPHFNPSFCDTDDRGVGVGGKGSTQYVVKGSQKEFPRELLQDLKIVCQDNISLDYDERYIHGKPQNSFHKAVNIPDVIVYPRSEEEVSKIVKLCNSHKVPIVPYGGATSIEGHTLSPHGGVCIDMSLMKRVKELHVNDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPQYSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQVKAINIANGKNLPECPTLMFEFIGTEAYAREQTQIVRKLVSEHNGSDFVFAEEPEAKKELWKVRKEALWACFAMEPNLVAMTTDVCVPLSHLGDLISRSKKELDASPLVCTVIAHAGDGNFHTVILFDPNQEEQRREAERLNQFMVHAALSLEGTCTGEHGVGTGKMKYLEEELGVEALRTMKKIKAVLDPNDIMNPGKLIPPHVCF*

>Glyma03g36390.2   sequence type=predicted peptide   gene model=Glyma03g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFVSFDVNSMSNFSSWYSRFRFSAKYLYCYHRTLHKNAPSTIFNNHGTRKNAWPTSLLPLALAVSAGSLALQPHFNPSFCDTDDRGVGVGGKGSTQYVVKGSQKEFPRELLQDLKIVCQDNISLDYDERYIHGKPQNSFHKAVNIPDVIVYPRSEEEVSKIVKLCNSHKVPIVPYGGATSIEGHTLSPHGGVCIDMSLMKRVKELHVNDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGASIGGMCATRCSGSLAVRYGTMRDNVISLKVVLANGDIVKTASRARKSAAGYDLTRLMIGSEGTLGVITEVTLRLQKIPQYSVVAMCNFPSVKDAADVAIATMMSGIQVSRVELLDEVQVKAINIANGKNLPECPTLMFEFIGTEAYAREQTQIVRKLVSEHNGSDFVFAEEPEAKKELWKVRKEALWACFAMEPNLVAMTTDVCVPLSHLGDLISRSKKELDASPLVCNCACW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain