Glyma03g36380 - SoyBase

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Report for Sequence Feature Glyma03g36380

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43353233
stop:	43356375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06570	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr5:2008075-2011013 REVERSE LENGTH=329	SoyBase	E_val: 4.00E-120	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9SDP1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1, putative n=1 Tax=Ricinus communis RepID=B9SDP1_RICCO	SoyBase	E_val: 5.00E-154	ISS
UniRef100_I1JQC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQC9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g36380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36380

Paralog	Evidence	Comments
Glyma19g39030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g205400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g36380

Limit To All Plant Sequences

>Glyma03g36380.2   sequence type=transcript   gene model=Glyma03g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACTCTTCCCAATCCCCACTAATTAATAGCAAGGCTAGCTCCACTATCGCAATCATTGTCCACTTATATATATATATACATTCACAACCAATTTACAAAACACACACACAGAAGCTAGCTAGCTCATAATTACAATAATGGGTTCCCTCCCTCACGTAGTAGAGGACTGCATGGGCTTCCTCCAACTTTATAGCGACGGTTCCATTTTCCGTTCCAACGACATAGAATTCAAAGTTTCACCCATTCAAGACAACTCCATAACCTATAAAGATTATCTCTTTGACAAGAGATTCAACCTTTCTCTTCGCTTCTACAAGCCCCAACACGTAGCACCCATAGACAATAACAAGAAGCTTCCTATTGTGATGTTCCTTCACGGTGGAGGCTTTTGCTTCGGTTCGCGCACGTGGCCCCATATTCACAACTGTTGCATGCGCCTCGCGTCGGGGCTCCAAGCGGTGGTGGTTTCGCCGGACTACCGTCTGGCGCCGGAGCACCGTCTTCCGGCCGCAGTAGACGACGCCGTGGAGGCGGTGAGGTGGCTCCAGAGGCAGGGGCTGAGCTTGAAGGAGGACGCGTGGTTGAGTGGGGGCGTTGACTTTGATTGCGTGTTCGTGGTGGGTGACTCGTCTGGCGGGAACATTGCGCACCACCTGGCGGTTCGGTTGGGGTCCGGTTCGAGAGAGATGGACCCGGTTCGGGTACGAGGTTACGTGTTGTTTGCTCCGTTTTTTGGCGGGGAGGTTCGGACCAAGTCCGAGGAAGGTCCACCAGAGCACATGTTGAACCTCGAGTTATTAGACAGGTTTGTGTTATTTCCAACTTCTTTGAAATGGACCACTTTAGCATCAATGTCACTGCTACATTGGAAGTGGTATGTAAGTAATTAAATGAACAAATGCTATAAAGTGGTGCCTATGTGAATTGACCCACTTAAAACACTTCACTACACTTGTCTGCGTTTTGACCTTATATGGGAAAGGAATATGCGATGAATAAGACACAACCGCATTTGGATAGACTAGTCTTAATTCTTAATTAGTTAAATGATTT

Coding sequences of Glyma03g36380

Limit To All Plant Sequences

>Glyma03g36380.1   sequence type=CDS   gene model=Glyma03g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCCTCCCTCACGTAGTAGAGGACTGCATGGGCTTCCTCCAACTTTATAGCGACGGTTCCATTTTCCGTTCCAACGACATAGAATTCAAAGTTTCACCCATTCAAGACAACTCCATAACCTATAAAGATTATCTCTTTGACAAGAGATTCAACCTTTCTCTTCGCTTCTACAAGCCCCAACACGTAGCACCCATAGACAATAACAAGAAGCTTCCTATTGTGATGTTCCTTCACGGTGGAGGCTTTTGCTTCGGTTCGCGCACGTGGCCCCATATTCACAACTGTTGCATGCGCCTCGCGTCGGGGCTCCAAGCGGTGGTGGTTTCGCCGGACTACCGTCTGGCGCCGGAGCACCGTCTTCCGGCCGCAGTAGACGACGCCGTGGAGGCGGTGAGGTGGCTCCAGAGGCAGGGGCTGAGCTTGAAGGAGGACGCGTGGTTGAGTGGGGGCGTTGACTTTGATTGCGTGTTCGTGGTGGGTGACTCGTCTGGCGGGAACATTGCGCACCACCTGGCGGTTCGGTTGGGGTCCGGTTCGAGAGAGATGGACCCGGTTCGGGTACGAGGTTACGTGTTGTTTGCTCCGTTTTTTGGCGGGGAGGTTCGGACCAAGTCCGAGGAAGGTCCACCAGAGCACATGTTGAACCTCGAGTTATTAGACAGATTTTGGAGGCTGTCGATGCCTGTTGGAGAGAGCAGAGACCACCCATTGGCGAATCCGTTCGGACCTGGAAGCCCAAATCTTGAACAAGTGAAGCTTGATCCTATTTTGGTAATAGTAGGTGGCAATGAATTGCTCAAGGATAGGGCAAAAAACTATGCAACAAGGTTAAAAAAATTAGACAAGGACATTAAATACGTTGAGTTTGAAGGGTGCGAGCATGGGTTTTTCACGCATGATTCATTCTCATCAGAAGTTACAGAAGAGGTCATCCAAATCCTTAAAGGATTCATGCTTGCAAACTTCTAG

>Glyma03g36380.2   sequence type=CDS   gene model=Glyma03g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCCCTCCCTCACGTAGTAGAGGACTGCATGGGCTTCCTCCAACTTTATAGCGACGGTTCCATTTTCCGTTCCAACGACATAGAATTCAAAGTTTCACCCATTCAAGACAACTCCATAACCTATAAAGATTATCTCTTTGACAAGAGATTCAACCTTTCTCTTCGCTTCTACAAGCCCCAACACGTAGCACCCATAGACAATAACAAGAAGCTTCCTATTGTGATGTTCCTTCACGGTGGAGGCTTTTGCTTCGGTTCGCGCACGTGGCCCCATATTCACAACTGTTGCATGCGCCTCGCGTCGGGGCTCCAAGCGGTGGTGGTTTCGCCGGACTACCGTCTGGCGCCGGAGCACCGTCTTCCGGCCGCAGTAGACGACGCCGTGGAGGCGGTGAGGTGGCTCCAGAGGCAGGGGCTGAGCTTGAAGGAGGACGCGTGGTTGAGTGGGGGCGTTGACTTTGATTGCGTGTTCGTGGTGGGTGACTCGTCTGGCGGGAACATTGCGCACCACCTGGCGGTTCGGTTGGGGTCCGGTTCGAGAGAGATGGACCCGGTTCGGGTACGAGGTTACGTGTTGTTTGCTCCGTTTTTTGGCGGGGAGGTTCGGACCAAGTCCGAGGAAGGTCCACCAGAGCACATGTTGAACCTCGAGTTATTAGACAGGTTTGTGTTATTTCCAACTTCTTTGAAATGGACCACTTTAGCATCAATGTCACTGCTACATTGGAAGTGGTATGTAAGTAATTAA

Predicted protein sequences of Glyma03g36380

Limit To All Plant Sequences

>Glyma03g36380.1   sequence type=predicted peptide   gene model=Glyma03g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLPHVVEDCMGFLQLYSDGSIFRSNDIEFKVSPIQDNSITYKDYLFDKRFNLSLRFYKPQHVAPIDNNKKLPIVMFLHGGGFCFGSRTWPHIHNCCMRLASGLQAVVVSPDYRLAPEHRLPAAVDDAVEAVRWLQRQGLSLKEDAWLSGGVDFDCVFVVGDSSGGNIAHHLAVRLGSGSREMDPVRVRGYVLFAPFFGGEVRTKSEEGPPEHMLNLELLDRFWRLSMPVGESRDHPLANPFGPGSPNLEQVKLDPILVIVGGNELLKDRAKNYATRLKKLDKDIKYVEFEGCEHGFFTHDSFSSEVTEEVIQILKGFMLANF*

>Glyma03g36380.2   sequence type=predicted peptide   gene model=Glyma03g36380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLPHVVEDCMGFLQLYSDGSIFRSNDIEFKVSPIQDNSITYKDYLFDKRFNLSLRFYKPQHVAPIDNNKKLPIVMFLHGGGFCFGSRTWPHIHNCCMRLASGLQAVVVSPDYRLAPEHRLPAAVDDAVEAVRWLQRQGLSLKEDAWLSGGVDFDCVFVVGDSSGGNIAHHLAVRLGSGSREMDPVRVRGYVLFAPFFGGEVRTKSEEGPPEHMLNLELLDRFVLFPTSLKWTTLASMSLLHWKWYVSN*

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