Glyma03g36360 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g36360

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43335583
stop:	43338089
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06550	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). \| chr5:200	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006626	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion	SoyBase	N/A	ISS
GO:0007166	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell surface receptor signaling pathway	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2130	KOG	Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain	JGI		ISS
PTHR12480	Panther	PHOSPHATIDYLSERINE RECEPTOR	JGI		ISS
PTHR12480:SF5	Panther	gb def: Hypothetical protein	JGI		ISS
PF02373	PFAM	JmjC domain	JGI		ISS
UniRef100_B9SDN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9SDN5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JQC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQC7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g36360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36360

Paralog	Evidence	Comments
Glyma19g39010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g205200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g36360

Limit To All Plant Sequences

>Glyma03g36360.1   sequence type=CDS   gene model=Glyma03g36360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAGAAGAAGAAGAAGAAGAAGTTAACGAGGAAGGCTTCAACATCAAAAGCTCTGCCCCGTCACACACTCACGGTGTTCAGCCCTTGGGGAATCTCTATCTGAACACAGGTTCCACCAACTCCAGAGACACTGGCTTAGGTAATCTTCATACCCTTTCGGATGATCTTGTTCTCGACATTCTCGGGTTTTTGGATGCTTCTTCCTTGGGGATTTTAGCCACTGTAAGCAAATCTTTCTACGTGTTCACCAACCACGAACCCCTTTTGGAGGAATCTCGGTCTTGGAAATCCACCTATGTTTCTGCTTGTTACCCTTCATTTGATTTCTTCACTAATGCTCTTGGGGGTTTCAAAGTTAGCAACTTTTATTCGGATTATCTCTTCCAGAGTTGGCTCTGTGCTAACCTTGGAATGAAGCCGGAGTGGAATTCGGTTGAGGAGTTTGTGTTGAATTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGGTGTTTTGAGGAATTGGGATAGGGATTATTTGGTGAGGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGTCATTGGAGATGAAGCTTGGAGAGTATTTTGGGTACTCGGGTCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCCGAGAAAGTTTCGAAATTGGGCGATGATTATGATGTTCCGGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAACGAGAGGCCGGACTACAGGTGGGTTATTATTGGACCTTCCGGGTCTGGATCTTCTTTCCACGTTGATCAGAATTCGACTTCGGCTTGGAATGCGGTGATCAAGGGGTCCAAGAAGTGGATCTTGTTTCCTCCCGATGTGATTCCACCTGGCGTTCATCCCAGTCCTGATGGTGCGGATGCGGCATCTCCTGTTTCGATAATTGAATGGTTTATGAACTTCTATGGTGCAACCAAAAATTGGCAAAAGAAACCAATTGAGTGCGTATGTAAAGCTGGAGAGGTGATCTTTGTGCCTTGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAATTATGTCAGTAAGAGAAATTTGATGAATGTCTTGGATTTTCTTAAAAGGCCAAATGCCACACTGGTATCTGGAACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAGAGGAAACTTTCCTTCTGGGATACTGATGCAGATACTTATTCGGGGGCTTTCAAGTTCTCTTTCTAG

Predicted protein sequences of Glyma03g36360

Limit To All Plant Sequences

>Glyma03g36360.1   sequence type=predicted peptide   gene model=Glyma03g36360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
EEEEEEEEVNEEGFNIKSSAPSHTHGVQPLGNLYLNTGSTNSRDTGLGNLHTLSDDLVLDILGFLDASSLGILATVSKSFYVFTNHEPLLEESRSWKSTYVSACYPSFDFFTNALGGFKVSNFYSDYLFQSWLCANLGMKPEWNSVEEFVLNFEEPNKPVLLEGCIDNWGVLRNWDRDYLVRLCGDVKFSVGSLEMKLGEYFGYSGQVREERPLYLFDPKFAEKVSKLGDDYDVPVYFREDLFGVLGNERPDYRWVIIGPSGSGSSFHVDQNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADAASPVSIIEWFMNFYGATKNWQKKPIECVCKAGEVIFVPCGWWHLVINLEESIAITQNYVSKRNLMNVLDFLKRPNATLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEEERKIQQRKLSFWDTDADTYSGAFKFSF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain