Report for Sequence Feature Glyma03g36350
Feature Type: gene_model
Chromosome: Gm03
Start: 43332759
stop: 43334879
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g36350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G06540 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr5:1999181-2001049 REVERSE LENGTH=622
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF47 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_D7LZR6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LZR6_ARALL
SoyBase E_val: 0 ISS
UniRef100_I1JQC6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQC6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g36350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g36350
Paralog Evidence Comments
Glyma19g39000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g36350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g205100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g36350
Coding sequences of Glyma03g36350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g36350.1 sequence type=CDS gene model=Glyma03g36350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTGACGAACAAATATTTGTCCAATTAGTAAAGATTGGACTCATCCTACAAGAATGTTGTTCAAATCTCGCTGTGATATTCAACCACCAACTTGCTCATTACGCCATAAGGGTCGCATCCCAAATCCAAAATCCCAACTTGTTCATCTACAATGCATTCATACGTGGGTGTTCCACCAGCGAAAACCCAGAAAATTCATTCCATTATTACATCAAAGCTCTACGCTTTGGTCTATTACCTGATAATATCACCCACCCTTTTTTGGTTAAGGCATGTGCCCAGCTTGAGAATGAACCTATGGGCATGCACGGACATGGTCAAGCCATTAAGCATGGATTTGAACAAGATTTTTACGTTCAAAACTCACTTGTTCATATGTATGCCACTGTTGGGGACATAAATGCTGCAAGGAGTGTTTTTCAGAGGATGTGCCGGTTTGATGTGGTGTCATGGACTTGCATGATTGCGGGGTATCACCGATGTGGGGATGCTGAATCTGCACGTGAACTGTTTGATAGAATGCCGGAGAGGAATTTGGTGACATGGAGCACGATGATTAGCGGTTATGCCCATAAAAATTGTTTTGAGAAAGCGGTTGAGATGTTTGAGGCTCTTCAGGCAGAAGGGTTGGTGGCTAATGAGGCTGTGATTGTGGATGTGATATCTTCTTGTGCTCATTTGGGGGCTCTTGCAATGGGGGAGAAAGCTCATGAGTATGTGATAAGGAATAACTTGAGTTTGAATTTGATTCTTGGGACAGCTGTGGTTGGTATGTATGCAAGATGTGGGAATATTGAGAAAGCTGTTAAGGTTTTTGAACAACTGCGGGAAAAGGATGTGCTTTGTTGGACAGCTTTGATTGCTGGATTGGCCATGCATGGTTATGCAGAGAAACCACTTTGGTATTTTTCACAAATGGAGAAAAAGGGGTTTGTTCCTCGAGACATTACGTTTACTGCAGTGTTGACAGCTTGCAGCCGTGCAGGAATGGTTGAGAGGGGTTTGGAAATATTCGAAAGCATGAAACGTGATCATGGGGTGGAGCCGAGACTGGAGCACTATGGATGTATGGTTGATCCTCTTGGCCGTGCAGGAAAGTTGGGAGAGGCAGAGAAGTTTGTTCTTGAAATGCCTGTGAAGCCAAATTCTCCAATATGGGGAGCATTGTTAGGAGCTTGCTGGATTCACAAGAATGTGGAAGTTGGGGAAATGGTGGGGAAGACTTTGTTAGAGATGCAACCAGAATATAGTGGTCATTACGTGCTACTCTCCAACATATGTGCTCGTGCAAATAAGTGGAAAGATGTTACTGTCATGAGGCAAATGATGAAGGACAGAGGAGTAAGAAAGCCAACTGGATATAGTCTCATTGAGATAGATGGAAAAGTACACGAATTTACAATTGGAGATAAAATACACCCGGAAATAGAGAAAATAGAAAGAATGTGGGAAGATATAATACTCCCAAAAATAAAACTAGCTGGCTATGTTGGAAATACCGCTGAGACAATGTTTGACATCGATGAAGAGGAAAAGGAAGGTGCCCTTCACAGGCATAGTGAGAAGCTGGCCATTGCATATATTATCAAGATTTGGCCTCCTACACCAATTCGGATTGTTAAAAACTTGCGTGTCTGTGAAGATTGTCACACAGCTACCAAGTTGATTTCAATGGTTTTCCAAGTGGAGTTGATTGTGAGAGATCGAAACCGATTCCATCACTTTAAAGAAGGTACGCGTTCTTGCATGGATTACTGGTGA
Predicted protein sequences of Glyma03g36350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g36350.1 sequence type=predicted peptide gene model=Glyma03g36350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIDEQIFVQLVKIGLILQECCSNLAVIFNHQLAHYAIRVASQIQNPNLFIYNAFIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENEPMGMHGHGQAIKHGFEQDFYVQNSLVHMYATVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAESARELFDRMPERNLVTWSTMISGYAHKNCFEKAVEMFEALQAEGLVANEAVIVDVISSCAHLGALAMGEKAHEYVIRNNLSLNLILGTAVVGMYARCGNIEKAVKVFEQLREKDVLCWTALIAGLAMHGYAEKPLWYFSQMEKKGFVPRDITFTAVLTACSRAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDPLGRAGKLGEAEKFVLEMPVKPNSPIWGALLGACWIHKNVEVGEMVGKTLLEMQPEYSGHYVLLSNICARANKWKDVTVMRQMMKDRGVRKPTGYSLIEIDGKVHEFTIGDKIHPEIEKIERMWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYIIKIWPPTPIRIVKNLRVCEDCHTATKLISMVFQVELIVRDRNRFHHFKEGTRSCMDYW*