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Report for Sequence Feature Glyma03g36260

Feature Type:gene_model
Chromosome:Gm03
Start:43263972
stop:43266950
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35860AT Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan protein 16 precursor | chr2:15059859-15061810 FORWARD LENGTH=445 SoyBaseE_val: 0ISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
KOG1437 KOG Fasciclin and related adhesion glycoproteins JGI ISS
PTHR10900Panther TRANSFORMING GROWTH FACTOR JGI ISS
PTHR10900:SF38Panther FLA (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN) JGI ISS
PF02469PFAM Fasciclin domain JGI ISS
UniRef100_I1JQB4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQB4_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8RWC5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein 16 n=1 Tax=Arabidopsis thaliana RepID=FLA16_ARATH SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g38910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g204300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g36260.5   sequence type=transcript   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGCTTGGAAAGAAACACATGGAGCTCTGAGTTGCCGTATGGTCCCCACACACAGGCTGTAAAAGAATAGTATATGCTATATGTTCATGTGACATGAACGCAAAGGAAGAGTTGAGATAGAGACCGAGCAACCATACCCCACACCCACGCATCCTTCTTCTCTTGTCATTTCCCCACACTCTCTTTCCCTCCATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGAAATCGCTTTCTCAACTAATTACAAAAATAATAAAGAGTGCATGTATGTAAACTCGATGAATGGTAAGTTTTACTTTTACCCACCACTCATTGCTTGCTTTTATTCATTTCTTGCAATAGCAGGTCTGATCTGATTCATATTTTCCCCCCATGCATTATGCAGTTGTAGAGTAATGATTTCAATACAAAAAGGATGGAAGCATCGTGAATCTATAGTTGGAGAGCGATTACACCGAAGATAACAAAAACAAATTTTCTGTCATTTTGGTCTCATACTGTAATTACATACCATTTTTTTATTAAATTTTATTTTATGTTGATTCTCCGTCTTTATGCGTAAATAACCGACACCCCTTCTTGGTTGCCTTTTTTTTTTTTTTCTTCTTGTTTGTATGTATGTGAATCAATTCATACATAATCTACTTTATTATTATTATGCCTTCCAAATGATTATTATGCCTTCTCAATTTCCA

>Glyma03g36260.6   sequence type=transcript   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTGGCTTGGAAAGAAACACATGGAGCTCTGAGTTGCCGTATGGTCCCCACACACAGGCTGTAAAAGAATAGTATATGCTATATGTTCATGTGACATGAACGCAAAGGAAGAGTTGAGATAGAGACCGAGCAACCATACCCCACACCCACGCATCCTTCTTCTCTTGTCATTTCCCCACACTCTCTTTCCCTCCATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGAAATCGCTTTCTCAACTAATTACAAAAATAATAAAGAGTGCATGTATGTAAACTCGATGAATGTTGTAGAGTAATGATTTCAATACAAAAAGGATGGAAGCATCGTGAATCTATAGTTGGAGAGCGATTACACCGAAGATAACAAAAACAAATTTTCTGTCATTTTGGTCTCATACTGTAATTACATACCATTTTTTTATTAAATTTTATTTTATGTTGATTCTCCGTCTTTATGCGTAAATAACCGACACCCCTTCTTGGTTGCCTTTTTTTTTTTTTTCTTCTTGTTTGTATGTATGTGAATCAATTCATACATAATCTACTTTATTATTATTATGCCTTCCAAATGATTATTATGCCTTCTCAATTTCCA

>Glyma03g36260.4   sequence type=CDS   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA

>Glyma03g36260.5   sequence type=CDS   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA

>Glyma03g36260.6   sequence type=CDS   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA

>Glyma03g36260.4   sequence type=predicted peptide   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ*

>Glyma03g36260.5   sequence type=predicted peptide   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ*

>Glyma03g36260.6   sequence type=predicted peptide   gene model=Glyma03g36260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ*







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