Report for Sequence Feature Glyma03g36260
Feature Type: gene_model
Chromosome: Gm03
Start: 43263972
stop: 43266950
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g36260
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G35860 AT
Annotation by Michelle Graham. TAIR10: FASCICLIN-like arabinogalactan protein 16 precursor | chr2:15059859-15061810 FORWARD LENGTH=445
SoyBase E_val: 0 ISS
GO:0007155 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell adhesion
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
KOG1437
KOG
Fasciclin and related adhesion glycoproteins
JGI ISS
PTHR10900 Panther
TRANSFORMING GROWTH FACTOR
JGI ISS
PTHR10900:SF38 Panther
FLA (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN)
JGI ISS
PF02469 PFAM
Fasciclin domain
JGI ISS
UniRef100_I1JQB4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQB4_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8RWC5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Fasciclin-like arabinogalactan protein 16 n=1 Tax=Arabidopsis thaliana RepID=FLA16_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g36260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g36260
Paralog Evidence Comments
Glyma19g38910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g36260 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g204300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g36260
Transcripts of Glyma03g36260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g36260.5 sequence type=transcript gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGTGGCTTGGAAAGAAACACATGGAGCTCTGAGTTGCCGTATGGTCCCCACACACAGGCTGTAAAAGAATAGTATATGCTATATGTTCATGTGACATGAACGCAAAGGAAGAGTTGAGATAGAGACCGAGCAACCATACCCCACACCCACGCATCCTTCTTCTCTTGTCATTTCCCCACACTCTCTTTCCCTCCATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGAAATCGCTTTCTCAACTAATTACAAAAATAATAAAGAGTGCATGTATGTAAACTCGATGAATGGTAAGTTTTACTTTTACCCACCACTCATTGCTTGCTTTTATTCATTTCTTGCAATAGCAGGTCTGATCTGATTCATATTTTCCCCCCATGCATTATGCAGTTGTAGAGTAATGATTTCAATACAAAAAGGATGGAAGCATCGTGAATCTATAGTTGGAGAGCGATTACACCGAAGATAACAAAAACAAATTTTCTGTCATTTTGGTCTCATACTGTAATTACATACCATTTTTTTATTAAATTTTATTTTATGTTGATTCTCCGTCTTTATGCGTAAATAACCGACACCCCTTCTTGGTTGCCTTTTTTTTTTTTTTCTTCTTGTTTGTATGTATGTGAATCAATTCATACATAATCTACTTTATTATTATTATGCCTTCCAAATGATTATTATGCCTTCTCAATTTCCA
>Glyma03g36260.6 sequence type=transcript gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGTGGCTTGGAAAGAAACACATGGAGCTCTGAGTTGCCGTATGGTCCCCACACACAGGCTGTAAAAGAATAGTATATGCTATATGTTCATGTGACATGAACGCAAAGGAAGAGTTGAGATAGAGACCGAGCAACCATACCCCACACCCACGCATCCTTCTTCTCTTGTCATTTCCCCACACTCTCTTTCCCTCCATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGAAATCGCTTTCTCAACTAATTACAAAAATAATAAAGAGTGCATGTATGTAAACTCGATGAATGTTGTAGAGTAATGATTTCAATACAAAAAGGATGGAAGCATCGTGAATCTATAGTTGGAGAGCGATTACACCGAAGATAACAAAAACAAATTTTCTGTCATTTTGGTCTCATACTGTAATTACATACCATTTTTTTATTAAATTTTATTTTATGTTGATTCTCCGTCTTTATGCGTAAATAACCGACACCCCTTCTTGGTTGCCTTTTTTTTTTTTTTCTTCTTGTTTGTATGTATGTGAATCAATTCATACATAATCTACTTTATTATTATTATGCCTTCCAAATGATTATTATGCCTTCTCAATTTCCA
Coding sequences of Glyma03g36260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g36260.4 sequence type=CDS gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA
>Glyma03g36260.5 sequence type=CDS gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA
>Glyma03g36260.6 sequence type=CDS gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGATCCTCCGCGCCGACGACGTCCTCCGCCCCGACGGCGTCATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA
Predicted protein sequences of Glyma03g36260
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g36260.4 sequence type=predicted peptide gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ*
>Glyma03g36260.5 sequence type=predicted peptide gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ*
>Glyma03g36260.6 sequence type=predicted peptide gene model=Glyma03g36260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ*