SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06440 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT3G11720.3); Has 157 Blast hits to 155 proteins in 41 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 6; Plants - 99; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). | chr5:1964641-1966807 REVERSE LENGTH=479 | SoyBase | E_val: 4.00E-111 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_Q2R2E6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q2R2E6_ORYSJ | SoyBase | E_val: 4.00E-110 | ISS |
| UniRef100_UPI00023372A8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023372A8 related cluster n=1 Tax=unknown RepID=UPI00023372A8 | SoyBase | E_val: 0 | ISS |
|
Glyma03g36221 not represented in the dataset |
Glyma03g36221 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g38867 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g203900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g36221.1 sequence type=CDS gene model=Glyma03g36221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAAAAAGGAAACATTGTGCAGTATAGGGAAAGGTTGGACAACACCCTTGCCTTACCAGATCTGACTAATGAACAGACACTCAAAACGCTTGTCAAAAGTCAACTCCAACGTTCTTCAGAAGTGGAAATCGAGGGATGTAATGAGAAAGAAGTAGAAACCAAGACTACAGAGCTATGCAACTTTCTTGATATGTTGAGAAGTGCTTCTGGAGACAATGGCGGAGGATCTGGTAGTACATCACACACTGATTGGAAATTAAAACAGGATAATGAAGAGTTTCGTGTTATGTATCGTGAAGGACCAGAGGGAACTCCCATTCATACATTGCTAGTTGAAGGCTATGTAGATGGACCTCTAGATCTTTCTTTATGCCTATCGTGGGAGACCCCTCTCTACAAGAAATGGTGGCCTCAGTTTACTATTCCCAGTTTCAAAATTTTAGTATCTGATCGTTTGCAGAGGGTCCAAATTGGGGAACAAATATCACTAGTTAGGATGAAGGTTCCATGGCCGCTGGCTACAAGGGAGGCTATAGTGCATTATTATCTGTTTGAGTACTATCAAGATGACTTAGTAGTTATTCTTTTGAATACGGTTCATGAGTCAAAAATTGATGATTTAAACAAGGATGCAATTCCTGAAGCAAAGGATGTCGTGAGAATTGATTTGGTGGGAGGCTATGCTATGCAAAAGGTGACATCAGAAAGAAGTTATTTTCGGATAATAGCAAATTTGGATTTAAAGCTAGATTTTGTACCTCCAACCCTCCTAAATTTCATTTCAAGGCAGCTCATCGGCAGTGGTTTCAGGCTTTATCAGAAGGCTGTGACTTCTATGATGGGCAATGATAAAGATAAAGACTTCAGCAAGGCCTTGGAGGACTCATTGTATGTTAGAATTCGTGAAGCTCTATTAAGCACTAGGAAATCAAAGGCTATGGATGGTGAAGAGCTTAAGCAAGATGCAAGCATTGTTCCTACAGAAGAACTTGTTCAAAGTGAGGACGGGGCAAAAGATGTATCCTGTGATGATAGCAGCAACCAATGCGCAAATAATTACAATGGAGAGACTTTAGATGCAGGTAGTGAAGAGATTGTACAAATTGATGAGGATGTCAATAAGGTACTTGGCGTTCCAATTGAGGAAGGTGATTCGTTGAGTGTACTGATGGAAAAGGAAAATGGTGAGATTGTAGATGCAGATAACGAAGAGATTGTAGAAACAGTTAGTGAAGAGATTGTTGAGACTGAGAAAGATGTCAACAAAGTGCATGGCATTCCAGTTGAGGAAGATGATACAAAGAGTGTACTGAAGGACAGAATGAATGTATATATACGCTCAGACGTGAGAAATGCTATAGAAACAATAGAGAGGGTTATTTCAGTAGTTAGAAAATGTGGATTTCATCCCCTCGGGTCCACTTTAAACTCTGCTGGTGAAGAGTTCCCCTGCATGGAAAAAGGTGGCACAGTTGATTCAGATTCTGCAAAAGTTATTGAAGTATGTTTGAAAAATGAGGATAGTGCCAAAGTATCAAGCAGCAATGTAGTGGAGGAAAATTTAGAAGAACCTGGGACGATACAAAGCTTCAGGCACACAGGAACAAATCCTAACTTAAAGGAAGTAAACTATAAGAAAATAGTACCGGCTTCACCAGAGCAGAATCTTTCAATACCAATTGAAACAAGCCAGGCTGATTCATATTCTTTGAAAAATGGGACAATTCTGGACCAAACAATATGTGATAACAAGCAATTAAACAGTGACGCAGTCCAAGATATGACTTCATATGACCTGAAAAAGTCAACCAGGGAGATGAAGTATCGATACTGTTGTTTTATGCATTAG
>Glyma03g36221.1 sequence type=predicted peptide gene model=Glyma03g36221 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKKGNIVQYRERLDNTLALPDLTNEQTLKTLVKSQLQRSSEVEIEGCNEKEVETKTTELCNFLDMLRSASGDNGGGSGSTSHTDWKLKQDNEEFRVMYREGPEGTPIHTLLVEGYVDGPLDLSLCLSWETPLYKKWWPQFTIPSFKILVSDRLQRVQIGEQISLVRMKVPWPLATREAIVHYYLFEYYQDDLVVILLNTVHESKIDDLNKDAIPEAKDVVRIDLVGGYAMQKVTSERSYFRIIANLDLKLDFVPPTLLNFISRQLIGSGFRLYQKAVTSMMGNDKDKDFSKALEDSLYVRIREALLSTRKSKAMDGEELKQDASIVPTEELVQSEDGAKDVSCDDSSNQCANNYNGETLDAGSEEIVQIDEDVNKVLGVPIEEGDSLSVLMEKENGEIVDADNEEIVETVSEEIVETEKDVNKVHGIPVEEDDTKSVLKDRMNVYIRSDVRNAIETIERVISVVRKCGFHPLGSTLNSAGEEFPCMEKGGTVDSDSAKVIEVCLKNEDSAKVSSSNVVEENLEEPGTIQSFRHTGTNPNLKEVNYKKIVPASPEQNLSIPIETSQADSYSLKNGTILDQTICDNKQLNSDAVQDMTSYDLKKSTREMKYRYCCFMH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
