Glyma03g36210 - SoyBase

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Report for Sequence Feature Glyma03g36210

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43223463
stop:	43226360
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62980	AT	Annotation by Michelle Graham. TAIR10: Dihydroneopterin aldolase \| chr5:25276384-25277083 FORWARD LENGTH=131	SoyBase	E_val: 2.00E-50	ISS
GO:0006760	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound metabolic process	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004150	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydroneopterin aldolase activity	SoyBase	N/A	ISS
PTHR20941	Panther	FOLATE SYNTHESIS PROTEINS	JGI		ISS
PTHR20941:SF3	Panther	DIHYDRONEOPTERIN ALDOLASE	JGI		ISS
PF02152	PFAM	Dihydroneopterin aldolase	JGI		ISS
UniRef100_C6T502	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T502_SOYBN	SoyBase	E_val: 4.00E-91	ISS
UniRef100_E9NZT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydroneopterin aldolase n=2 Tax=Phaseolus vulgaris RepID=E9NZT1_PHAVU	SoyBase	E_val: 5.00E-77	ISS

Expression Patterns of Glyma03g36210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36210

Paralog	Evidence	Comments
Glyma19g38854	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g203800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g36210

Limit To All Plant Sequences

>Glyma03g36210.5   sequence type=transcript   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACGGAGAGGCGAGGGAGTGAGGGACTAGCACAGAAAGATATTGTTTGGTGTACGGTGGTGAGTGTCGACGCTGCCACTCTCGCCTGTGTCTGTGATCAGAAATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAGAAATTTCATATTTATTGCTGCACAATTTTTATATTTTCACATTCCACTTGATACAAAAGTAATGTAACTCTTTCCTTCATGCCCCATTAGTCTTTTCTCTCTTAAGCAATCTTGCTAATGAAATTAAAAGATCAAAGTTAGGCATATTAAAGGAACTATACAATTAATTTGGATTCTCCAAAACAAAAAATTGCAGTGAGACAGTTATTTAATGAGTTGCCTAA

>Glyma03g36210.6   sequence type=transcript   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAATCAGGTGAAGTTGCTTTAACCATTCAACTTAAAAAAAAAAATGTTCCTTTGGTAGTGCCAATCATGAATGTTTTTGAAAGTAATAAAGGGGTAAACATACAGCGTATACTAAAATTAACTTCAAAATTATTTGGATCTCTTTCATTTGGATGCTGCATTCCACAGCCCTACGAGCTCCAGAGCAGAAATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAGAAATTTCATATTTATTGCTGCACAATTTTTATATTTTCACATTCCACTTGATACAAAAGTAATGTAACTCTTTCCTTCATGCCCCATTAGTCTTTTCTCTCTTAAGCAATCTTGCTAATGAAATTAAAAGATCAAAGTTAGGCATATTAAAGGAACTATACAATTAATTTGGATTCTCCAAAACAAAAAATTGCAGTGAGACAGTTATTT

>Glyma03g36210.7   sequence type=transcript   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCAATCAGGTGAAGTTGCTTTAACCATTCAACTTAAAAAAAAAAATGTTCCTTTGGTAGTGCCAATCATGAATGTTTTTGAAAGTAATAAAGGGGTAAACATACAGCGTATACTAAAATTAACTTCAAAATTATTTGGATCTCTTTCATTTGGATGCTGCATTCCACAGCCCTACGAGCTCCAGAGAAATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAGAAATTTCATATTTATTGCTGCACAATTTTTATATTTTCACATTCCACTTGATACAAAAGTAATGTAACTCTTTCCTTCATGCCCCATTAGTCTTTTCTCTCTTAAGCAATCTTGCTAATGAAATTAAAAGATCAAAGTTAGGCATATTAAAGGAACTATACAATTAATTTGGATTCTCCAAAACAAAAAATTGCAGTGAGACAGTTATTT

Coding sequences of Glyma03g36210

Limit To All Plant Sequences

>Glyma03g36210.4   sequence type=CDS   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAG

>Glyma03g36210.5   sequence type=CDS   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAG

>Glyma03g36210.6   sequence type=CDS   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAG

>Glyma03g36210.7   sequence type=CDS   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTGATGCACCGACATGGGGAGACAAACTCATGTTGAGGGGATTGTCATTCCATGGTTTTCATGGAGCAAAGCCTGAAGAAAGGACACTGGGCCAGAAGTTCTTCATAGATATAGATGCTTGGATGGATCTCAAAGCAGCTGGCAAATCTGATCACTTATCAGATTCTGTTAGTTACACAGAAATATATGATATAGCTAAGGATGTTCTTGAAGGGTCACCTCACAATCTTCTGGAGTCAGTGGCCCAAAAAATTGCAATCACTACTCTTACAAATCATAAAGAAATATCTGCTGTCCGAGTGAAGGTTGGAAAGCCTCATGTGGCAGTTCGGGGTCCAGTTGATTACTTAGGCGTTGAGATTCTTAGACGCAGAAGCGACTTGTCAGGCTAG

Predicted protein sequences of Glyma03g36210

Limit To All Plant Sequences

>Glyma03g36210.4   sequence type=predicted peptide   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDAPTWGDKLMLRGLSFHGFHGAKPEERTLGQKFFIDIDAWMDLKAAGKSDHLSDSVSYTEIYDIAKDVLEGSPHNLLESVAQKIAITTLTNHKEISAVRVKVGKPHVAVRGPVDYLGVEILRRRSDLSG*

>Glyma03g36210.5   sequence type=predicted peptide   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDAPTWGDKLMLRGLSFHGFHGAKPEERTLGQKFFIDIDAWMDLKAAGKSDHLSDSVSYTEIYDIAKDVLEGSPHNLLESVAQKIAITTLTNHKEISAVRVKVGKPHVAVRGPVDYLGVEILRRRSDLSG*

>Glyma03g36210.6   sequence type=predicted peptide   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDAPTWGDKLMLRGLSFHGFHGAKPEERTLGQKFFIDIDAWMDLKAAGKSDHLSDSVSYTEIYDIAKDVLEGSPHNLLESVAQKIAITTLTNHKEISAVRVKVGKPHVAVRGPVDYLGVEILRRRSDLSG*

>Glyma03g36210.7   sequence type=predicted peptide   gene model=Glyma03g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESDAPTWGDKLMLRGLSFHGFHGAKPEERTLGQKFFIDIDAWMDLKAAGKSDHLSDSVSYTEIYDIAKDVLEGSPHNLLESVAQKIAITTLTNHKEISAVRVKVGKPHVAVRGPVDYLGVEILRRRSDLSG*

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