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Report for Sequence Feature Glyma03g36170

Feature Type:gene_model
Chromosome:Gm03
Start:43188430
stop:43189426
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g36170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35910AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:15073225-15073878 REVERSE LENGTH=217 SoyBaseE_val: 2.00E-57ISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR14155Panther RING FINGER PROTEIN 6/12/38 JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9SDK9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9SDK9_RICCO SoyBaseE_val: 3.00E-71ISS
UniRef100_I1JQA3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQA3_SOYBN SoyBaseE_val: 2.00E-120ISS

Expression Patterns of Glyma03g36170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g36170 not represented in the dataset
Glyma03g36170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g36170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g203400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g36170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g36170
>Glyma03g36170.1   sequence type=CDS   gene model=Glyma03g36170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGCAACACAACAGTTAATTCCCCTGGATTCCTTGGCTCAAGCAACATCAGTGGCTATAGCTATGGCATAGGAATTTCCATTGGAATTCTCTTGCTCATTATAACCATCACTTTAACTTCCTACTTCTGCACCAGATCACAGGTGTCATTTGCTCCAGCCACTAGGAATAGGAGACGCACCCCAAATGTCCTTGAACCACAGCACTCTATAGTTGATGTAAGTTTAGATGAAGCCACAATTCTGAGTTATCCAACCCTTTTGTACTCTGAAGCCAAGCTCAAGAAATCTGATTCCACTGCTACATGTTGCTCCATATGTCTGGCAGATTACAAGGGTACGGATATGCTTCGGATGCTACCAGATTGTGGGCACCAATTCCACCTCAAGTGCATAGATCCATGGTTGAGGTTGCATCCTACTTGTCCAGTTTGCAGAACTTCTCCGATTCCAACACCACTCTCAACTCCTCTTGCTGAAGTGGTTCCTTTAGCTAGCAGACAGGATTCATAG
Predicted protein sequences of Glyma03g36170
>Glyma03g36170.1   sequence type=predicted peptide   gene model=Glyma03g36170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSNTTVNSPGFLGSSNISGYSYGIGISIGILLLIITITLTSYFCTRSQVSFAPATRNRRRTPNVLEPQHSIVDVSLDEATILSYPTLLYSEAKLKKSDSTATCCSICLADYKGTDMLRMLPDCGHQFHLKCIDPWLRLHPTCPVCRTSPIPTPLSTPLAEVVPLASRQDS*






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