Glyma03g36070 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g36070

Feature Type:	gene_model
Chromosome:	Gm03
Start:	43086950
stop:	43091838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g36070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35940	AT	Annotation by Michelle Graham. TAIR10: BEL1-like homeodomain 1 \| chr2:15089171-15091699 REVERSE LENGTH=680	SoyBase	E_val: 8.00E-172	ISS
GO:0000303	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to superoxide	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0009610	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to symbiotic fungus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009743	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to carbohydrate stimulus	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009873	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010197	GO-bp	Annotation by Michelle Graham. GO Biological Process: polar nucleus fusion	SoyBase	N/A	ISS
GO:0010201	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to continuous far red light stimulus by the high-irradiance response system	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0048513	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
KOG0773	KOG	Transcription factor MEIS1 and related HOX domain proteins	JGI		ISS
PTHR11850	Panther	HOMEOBOX PROTEIN	JGI		ISS
PTHR11850:SF14	Panther	BEL1 HOMEOTIC PROTEIN	JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF07526	PFAM	Associated with HOX	JGI		ISS
UniRef100_B9SDI4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SDI4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023397A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023397A4 related cluster n=1 Tax=unknown RepID=UPI00023397A4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g36070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g36070

Paralog	Evidence	Comments
Glyma19g38690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g36070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g202300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g36070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g36070

Limit To All Plant Sequences

>Glyma03g36070.1   sequence type=CDS   gene model=Glyma03g36070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCGGGTGGCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTATATCCACTACTCCGACGCGCCGCCGCCGCAGCAGCAAACCTCACAAACCGCCGGAAACCTCGTGTTTCTCAACCCCGCCGCGGTTGCTGGAGGAAATAATAACTCGTTTAACCCCCACGCGCCGCCATCTCACACCCAACAATTCGTTGGAATCCCTCTCCCAAATTCCCAAGACCTCAACCACCACTCCATGCACGCGCACCACGATGTCTCAGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAATCCCTGGAACGCGCTCGACCCCGCCTTGGCGGCGCGTGAAAATCCACGCGCGCAGCAGGGGCTGTCTTTGGGGTTGGGGTCGTTCCGGGAGGGTCAGGCGCCGGCCATGTCCGGCGACGACCTGCGCATATCGGGCGGGTCGCCGTCGTCGGCTTCTGGGGTTACCAATAACGGAGCTTCTGGCATTCAGAGCGTGCTTTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAATGGAATTGGCACTGAGTTGGGGAAAAAAAGAGGGGGGCAGAACAAGGTAGTTGGAGAATCTTCCGCAGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAGCGCAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAAATGAAGAAAGCCAAACTAATTGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATAGTGGGTTCATCATTTGAGCAAGCTGCGGGGATTGGTTCAGCAAGGACTTACACTGCCCTTGCATTGCAAACAATCTCGAAGCAGTTTCGGTGCTTGAAAGATGCAATTGCAGGGCAGGTTCGCACTGCGAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGTAAAATGGAAGGTTCGAGGCTCAAATATGTTGACCATCATCTTCGGCAACAGCGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCTTATCCTAAGGATTCGGACAAGCACATGCTTGCAAAACAAACAGGGTTAACAAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACACGGAGGAGATGAAGGATCATGAACAGAATCGGTCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTGCTTCGAAAATGTCAGCCCCACAAGACAAAGGTCCTTCCAATGAAACCGAAGCTAAGAGTTTCAATTCCAAACATGAGGTTTCTAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGGCCATCAACATCACCACTTGGTGTGAATGTGAGAAGCCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGATGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAGCATGGATGTGAAGCCCAATGATGAAAACAATGAGCAGCTCTCAATGAAATTTGGGGTTGAAAGGCAAGGCAGAAATGAGTCCTCTTTCATGGGAAATCAAACAAACTTTAATGGTGGGTTTGGACAGTATCCAATTGGGGATATTGGAAGGTTTGACACAGAGCAGTTTACACCAAGGCTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTCCCAAACCAAAACATTCAACTGGGAAGAAGCTTGGACATTGGTGAACCAAACGAGTTTGGTGCCATAAGCACTTCCTCTCCTCACTCAACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTAA

Predicted protein sequences of Glyma03g36070

Limit To All Plant Sequences

>Glyma03g36070.1   sequence type=predicted peptide   gene model=Glyma03g36070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATYFHHGNSEIQSGGADGLQTLVLMNPGYIHYSDAPPPQQQTSQTAGNLVFLNPAAVAGGNNNSFNPHAPPSHTQQFVGIPLPNSQDLNHHSMHAHHDVSALHGFLPRMQYNPWNALDPALAARENPRAQQGLSLGLGSFREGQAPAMSGDDLRISGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKRGGQNKVVGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVGSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRTANKSLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKDHEQNRSEDKSSKSNEDSASKMSAPQDKGPSNETEAKSFNSKHEVSKSQNTAMVSVSRPSTSPLGVNVRSQSGFSFMGSSELDGITQGSPKKPRNHEMMHSPNSVPSMSMDVKPNDENNEQLSMKFGVERQGRNESSFMGNQTNFNGGFGQYPIGDIGRFDTEQFTPRLSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAISTSSPHSTAAYESISMQNPKRFAAQLLPDFVT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain