Report for Sequence Feature Glyma03g36030
Feature Type: gene_model
Chromosome: Gm03
Start: 43022552
stop: 43026048
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g36030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G09180 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402
SoyBase E_val: 3.00E-170 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0046482 GO-bp
Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0016592 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mediator complex
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR13130 Panther
34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
JGI ISS
PTHR13130:SF2 Panther
34 KDA TRANSCRIPTIONAL CO-ACTIVATOR
JGI ISS
PF11571 PFAM
Mediator complex subunit 27
JGI ISS
UniRef100_I1JQ84 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ84_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8RWM3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 27 n=1 Tax=Arabidopsis thaliana RepID=MED27_ARATH
SoyBase E_val: 2.00E-167 ISS
Expression Patterns of Glyma03g36030
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma03g36030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g201900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g36030
Transcripts of Glyma03g36030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g36030.4 sequence type=transcript gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCCGAGTTGTACGAAAATACTAACTGAGTCGGAACCCACTTTCTTTTCTTTGTGGGCGTGCCACGGGCAAATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAATTGCATCTACCAGTGACTCAGGTTGGAAGGTAAGGGGTTGGTGAAGCGATTTGGTTATCTTTGGTCTATATTTTTCATCTCTTAGATTGGAATTGGATCTTCAGGAAATTGACGAGTGCCTTGCTTGTTTTGTAAGCCTCATGAAAGTGGCAGCCATCTGTTCTAAAGATTTCTCAGATATTCATTGAGATTGGTTTTTTGGATACCAAGAAGTTCTCACGTATAATTGCCACTAGACCAAAAAGTACAAGATAGGAACATTATGACCTGCGTATGCTAAATGAAAGTGCCAGCTGACTGTAATTTTTGAAATTTATCAGCATGTGAATACATTATAATGACCGTCTGCAATATTTCTTATTTTAAAATGATGCTGACTACGATGTAGTACACAACTACCTTCTCCGTATAATAGTTATTATATAATCACTACAAAATTAC
>Glyma03g36030.5 sequence type=transcript gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCCGAGTTGTACGAAAATACTAACTGAGTCGGAACCCACTTTCTTTTCTTTGTGGGCGTGCCACGGGCAAATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAATTGCATCTACCAGTGACTCAGGTATAACCCAAGTGCCCGATTCAATGTGGAACTACCAGGAGCAAGAGTTTCCATTTCATTGATGTATGTATGTTCCCCTTTTCCTGTCATGTATAGGTTGGAAGGTAAGGGGTTGGTGAAGCGATTTGGTTATCTTTGGTCTATATTTTTCATCTCTTAGATTGGAATTGGATCTTCAGGAAATTGACGAGTGCCTTGCTTGTTTTGTAAGCCTCATGAAAGTGGCAGCCATCTGTTCTAAAGATTTCTCAGATATTCATTGAGATTGGTTTTTTGGATACCAAGAAGTTCTCACGTATAATTGCCACTAGACCAAAAAGTACAAGATAGGAACATTATGACCTGCGTATGCTAAATGAAAGTGCCAGCTGACTGTAATTTTTGAAATTTATCAGCATGTGAATACATTATAATGACCGTCTGCAATATTTCTTATTTTAAAATGATGCTGACTACGATGTAGTACACAACTACCTTCTCCGTATAATAGTTATTATATAATCACTACAAAATTAC
Coding sequences of Glyma03g36030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g36030.3 sequence type=CDS gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA
>Glyma03g36030.4 sequence type=CDS gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA
>Glyma03g36030.5 sequence type=CDS gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA
Predicted protein sequences of Glyma03g36030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g36030.3 sequence type=predicted peptide gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQMQMQQTQQQLQATAAPFSTSTPPPPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTLSTNENYLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*
>Glyma03g36030.4 sequence type=predicted peptide gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQMQMQQTQQQLQATAAPFSTSTPPPPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTLSTNENYLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*
>Glyma03g36030.5 sequence type=predicted peptide gene model=Glyma03g36030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQMQMQQTQQQLQATAAPFSTSTPPPPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTLSTNENYLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*