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Report for Sequence Feature Glyma03g36030

Feature Type:gene_model
Chromosome:Gm03
Start:43022552
stop:43026048
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09180AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402 SoyBaseE_val: 3.00E-170ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13130Panther 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED JGI ISS
PTHR13130:SF2Panther 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR JGI ISS
PF11571PFAM Mediator complex subunit 27 JGI ISS
UniRef100_I1JQ84UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ84_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8RWM3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 27 n=1 Tax=Arabidopsis thaliana RepID=MED27_ARATH SoyBaseE_val: 2.00E-167ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g201900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g36030.4   sequence type=transcript   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGAGTTGTACGAAAATACTAACTGAGTCGGAACCCACTTTCTTTTCTTTGTGGGCGTGCCACGGGCAAATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAATTGCATCTACCAGTGACTCAGGTTGGAAGGTAAGGGGTTGGTGAAGCGATTTGGTTATCTTTGGTCTATATTTTTCATCTCTTAGATTGGAATTGGATCTTCAGGAAATTGACGAGTGCCTTGCTTGTTTTGTAAGCCTCATGAAAGTGGCAGCCATCTGTTCTAAAGATTTCTCAGATATTCATTGAGATTGGTTTTTTGGATACCAAGAAGTTCTCACGTATAATTGCCACTAGACCAAAAAGTACAAGATAGGAACATTATGACCTGCGTATGCTAAATGAAAGTGCCAGCTGACTGTAATTTTTGAAATTTATCAGCATGTGAATACATTATAATGACCGTCTGCAATATTTCTTATTTTAAAATGATGCTGACTACGATGTAGTACACAACTACCTTCTCCGTATAATAGTTATTATATAATCACTACAAAATTAC

>Glyma03g36030.5   sequence type=transcript   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCGAGTTGTACGAAAATACTAACTGAGTCGGAACCCACTTTCTTTTCTTTGTGGGCGTGCCACGGGCAAATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAATTGCATCTACCAGTGACTCAGGTATAACCCAAGTGCCCGATTCAATGTGGAACTACCAGGAGCAAGAGTTTCCATTTCATTGATGTATGTATGTTCCCCTTTTCCTGTCATGTATAGGTTGGAAGGTAAGGGGTTGGTGAAGCGATTTGGTTATCTTTGGTCTATATTTTTCATCTCTTAGATTGGAATTGGATCTTCAGGAAATTGACGAGTGCCTTGCTTGTTTTGTAAGCCTCATGAAAGTGGCAGCCATCTGTTCTAAAGATTTCTCAGATATTCATTGAGATTGGTTTTTTGGATACCAAGAAGTTCTCACGTATAATTGCCACTAGACCAAAAAGTACAAGATAGGAACATTATGACCTGCGTATGCTAAATGAAAGTGCCAGCTGACTGTAATTTTTGAAATTTATCAGCATGTGAATACATTATAATGACCGTCTGCAATATTTCTTATTTTAAAATGATGCTGACTACGATGTAGTACACAACTACCTTCTCCGTATAATAGTTATTATATAATCACTACAAAATTAC

>Glyma03g36030.3   sequence type=CDS   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA

>Glyma03g36030.4   sequence type=CDS   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA

>Glyma03g36030.5   sequence type=CDS   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGATGCAGATGCAACAAACGCAGCAGCAGCTGCAGGCCACGGCGGCACCATTCTCGACCTCCACTCCTCCTCCTCCTCCTCCTTCCTCCGGCGGCTCCGCGTCCGAGGCACCGCCGAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAAGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGGTCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGACTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCCGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCGGGTGCTTCTGCCGTTGACCGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCCGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTTGTCAACAAATGAGAATTATTTGGAACATAACTATCATGGTTCTAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCATGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGTTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCGACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAAACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTCCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTAAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA

>Glyma03g36030.3   sequence type=predicted peptide   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMQMQQTQQQLQATAAPFSTSTPPPPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTLSTNENYLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*

>Glyma03g36030.4   sequence type=predicted peptide   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMQMQQTQQQLQATAAPFSTSTPPPPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTLSTNENYLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*

>Glyma03g36030.5   sequence type=predicted peptide   gene model=Glyma03g36030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQMQMQQTQQQLQATAAPFSTSTPPPPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTLSTNENYLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDVVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSKPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*







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