Glyma03g35900 - SoyBase

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Report for Sequence Feature Glyma03g35900

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42968200
stop:	42970734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52500	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr3:19465644-19467053 REVERSE LENGTH=469	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0006546	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycine catabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_B9T7L5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pepsin A, putative n=1 Tax=Ricinus communis RepID=B9T7L5_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JQ75	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ75_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g35900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35900

Paralog	Evidence	Comments
Glyma19g38560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g200900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g35900

Limit To All Plant Sequences

>Glyma03g35900.1   sequence type=CDS   gene model=Glyma03g35900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTCCTCCTTCTTCTTCTTACATTATCACTGTCTTTCTATTACTATCTCTTCTCTCTCACATCGCTTTCACTTCCTCAAACCCCAACACCATCACTCTCCCACTCTCCCCTCTCCTCATCAAACCCCATTCCTCAGACTCAGATCCATTCCACTCTCTCAAATTTGCAGCTTCCGCTTCCCTAACCCGGGCCCACCACCTCAAACACCGCAACAACAATTCCCCCTCCGTAGCCACAACCCCAGCATACCCCAAATCCTACGGTGGCTACTCCATAGATCTCAACCTCGGAACCCCACCTCAAACCTCCCCCTTCGTTCTCGACACAGGTAGCAGCCTCGTTTGGTTCCCCTGCACCTCCCGCTACCTCTGCTCCCACTGCAACTTCCCCAACATCGACACCACCAAAATCCCAACCTTCATTCCCAAAAACTCCTCCACCGCCAAACTCCTCGGTTGCAGAAACCCCAAATGTGGCTACATCTTCGGCTCCGACGTTCAATTTCGCTGCCCCCAATGCAAACCAGAATCCCAAAACTGTTCCCTAACATGCCCCGCCTACATAATCCAATACGGCCTAGGCTCCACCGCAGGCTTCTTACTCCTCGACAACCTCAATTTCCCGGGAAAGACTGTTCCTCAATTTCTCGTAGGTTGCTCCATCCTATCCATTCGCCAACCCTCCGGAATCGCTGGCTTCGGTCGCGGCCAAGAGTCTCTCCCCTCACAAATGAATCTCAAAAGATTCTCATACTGCTTAGTTTCCCACCGCTTCGATGATACACCACAAAGCAGCGATCTCGTTTTGCAGATTAGCTCCACGGGCGACACCAAAACTAACGGCCTCAGCTACACGCCGTTTCGCTCCAACCCATCAACTAACAACCCGGCGTTTAAAGAGTACTACTATCTCACTCTTCGCAAGGTCATTGTTGGGGGCAAGGATGTTAAGATTCCGTATACGTTTTTGGAGCCTGGCTCTGACGGTAACGGCGGCACCATCGTTGACTCTGGATCCACCTTCACGTTCATGGAAAGGCCCGTTTATAATTTGGTGGCACAAGAGTTTGTGAAGCAGTTGGAGAAGAATTATTCCAGGGCCGAGGACGCTGAGACCCAATCTGGGTTGAGTCCCTGTTTTAATATCTCCGGCGTCAAGACCGTCACTTTCCCCGAGTTGACTTTTAAGTTCAAAGGCGGCGCCAAAATGACGCAGCCGCTTCAGAATTATTTCTCATTGGTCGGAGATGCCGAGGTCGTGTGTTTGACCGTTGTCTCCGACGGAGGTGCCGGTCCGCCCAAGACAACCGGTCCGGCCATCATCTTGGGGAATTATCAGCAGCAGAATTTCTACATTGAATATGATTTGGAGAATGAGAGGTTCGGATTTGGTCCTCGTAGTTGCAGAAGGAAAGCTTAG

Predicted protein sequences of Glyma03g35900

Limit To All Plant Sequences

>Glyma03g35900.1   sequence type=predicted peptide   gene model=Glyma03g35900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPPSSSYIITVFLLLSLLSHIAFTSSNPNTITLPLSPLLIKPHSSDSDPFHSLKFAASASLTRAHHLKHRNNNSPSVATTPAYPKSYGGYSIDLNLGTPPQTSPFVLDTGSSLVWFPCTSRYLCSHCNFPNIDTTKIPTFIPKNSSTAKLLGCRNPKCGYIFGSDVQFRCPQCKPESQNCSLTCPAYIIQYGLGSTAGFLLLDNLNFPGKTVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMNLKRFSYCLVSHRFDDTPQSSDLVLQISSTGDTKTNGLSYTPFRSNPSTNNPAFKEYYYLTLRKVIVGGKDVKIPYTFLEPGSDGNGGTIVDSGSTFTFMERPVYNLVAQEFVKQLEKNYSRAEDAETQSGLSPCFNISGVKTVTFPELTFKFKGGAKMTQPLQNYFSLVGDAEVVCLTVVSDGGAGPPKTTGPAIILGNYQQQNFYIEYDLENERFGFGPRSCRRKA*

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