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Report for Sequence Feature Glyma03g35850

Feature Type:gene_model
Chromosome:Gm03
Start:42945106
stop:42945576
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g35850
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52520AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19473483-19473884 FORWARD LENGTH=133 SoyBaseE_val: 4.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1JQ72UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ72_SOYBN SoyBaseE_val: 2.00E-107ISS

Expression Patterns of Glyma03g35850
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35850
ParalogEvidenceComments
Glyma19g38510 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35850 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g200500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g35850
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g35850
>Glyma03g35850.1   sequence type=CDS   gene model=Glyma03g35850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGACAGAGTCCACCACCACCCACGCGCCGCCAGAGTCGCCGCCCCTCCACCGCCACAACTCCATCACCGGCCCATCGGCGCCCAAACTCTCCCTCCCCGCCACGCCGCCGCAGCGCACATCAAGCTTCGAACTTGTATCCCTTATGTCCCCCTTCTCCGCCTCCTACACTTCCCTCCGAGACATGCTCCCTTCGCCCTACGCCGCCGTGAACTCCCCCACCGCCTCCGTGTACTCCGGCCAAGAAATTTCCATCCGCAACCGCCTCGTTAAGCAAGCCGCCTGGGCCTACCTTCAGCCCATGTCCGCCTCCCAAGGCGGCGCCTCCACTCCCAACTTCCTCCGCCGCCTCTCCGCCGCCTGCCTCGGCTTCTTCTACCACCACTTCTTCCCCGCCGTTACCCGGTTTTTCCGTCGAATGCTCCACGCTCTCAGGGTCCACGTGTTCACACGATTCTACTCTTGA
Predicted protein sequences of Glyma03g35850
>Glyma03g35850.1   sequence type=predicted peptide   gene model=Glyma03g35850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETESTTTHAPPESPPLHRHNSITGPSAPKLSLPATPPQRTSSFELVSLMSPFSASYTSLRDMLPSPYAAVNSPTASVYSGQEISIRNRLVKQAAWAYLQPMSASQGGASTPNFLRRLSAACLGFFYHHFFPAVTRFFRRMLHALRVHVFTRFYS*






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