Report for Sequence Feature Glyma03g35830
Feature Type: gene_model
Chromosome: Gm03
Start: 42929614
stop: 42935439
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g35830
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G11620 AT
Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:3669551-3671734 REVERSE LENGTH=312
SoyBase E_val: 7.00E-150 ISS
GO:0000394 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0030003 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG3975
KOG
Uncharacterized conserved protein
JGI ISS
PTHR13390 Panther
LIPASE
JGI ISS
PF10230 PFAM
Uncharacterised conserved protein (DUF2305)
JGI ISS
UniRef100_C6T7M0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T7M0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q0WPD9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Esterase/lipase domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=Q0WPD9_ARATH
SoyBase E_val: 3.00E-147 ISS
Expression Patterns of Glyma03g35830
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g35830
Paralog Evidence Comments
Glyma19g38491 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g35830 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g200300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g35830
Coding sequences of Glyma03g35830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g35830.1 sequence type=CDS gene model=Glyma03g35830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTCCTCGTCTGGCTTGGTGGACTGGTCGATCCCTCTCTCACTCCTTGCTGTTGCCTCCTCCCACCTCCAGCACCAGGTTTATTGCCAAGTGTTTGAATAAGAACATGGGCGTGGACAATAATTTGCTTGCCAAACCTAGAAGGCGTGCTAATTTTCGGTTATGCAATGTGTCATGTTACACTTCTGAAGTATTGGAGATTCAATCTGATGCTCCTACACTGCATGTTCTGTTTGTTCCTGGAAACCCAGGTGTTATTTTATTCTACAAGGACTTTGTGGAATTTCTATATGAGTTGCTGGAGGGAACTGCTTCTGTCACAGCTATTGGCCATGTTTCTCACTCAAGAAAGAACTTGGAACATGGACGCATGTTTTCTTTACAAGAACAAATCGATCACAAGATTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTGGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAGGTGAAATATTGCATTGGACTTTATCCATTTTTGACGTTAAACCCACACTCAACAACACAGTTAGTTATTGGAAAAATTGCCAAATCCCAAGTTCTAGCTGCTGCTCTTAGTTACCTGACAGCATCATTAGGATTGTTACCTGTCCAGGCTTTGAGGTTTCTTGTCAGAAAATCCCTTGGGAAGTCATGGTCAGCCAATGCAGTTGAGGCAGCATGCTCTCACTTGTCACAGTATCATACCATGCGGAATGTCCTCTATATGGCCATGACTGAATTCAGAAAGCTTTCAGAGGCACCAGATTGGATATTTATGAGAGAAAGGAAGGCTCAATTGGCATTTTTATTTGGTGTTGACGATCACTGGGGACCACTTCATTTGCTTGAAGAGATTTCAAAGCATGTTCCCGGTATGGCCACATATATTGAAAGAGAAAACCACACCCATGGTTTCTGTTGTACTGAGGCTGGCTCATTATGGGTGGCTCAACATGTGGTAAACTTGATCAAGAATCAGATGGCTTGTTCAAACCAATAA
Predicted protein sequences of Glyma03g35830
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g35830.1 sequence type=predicted peptide gene model=Glyma03g35830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLPRLAWWTGRSLSHSLLLPPPTSSTRFIAKCLNKNMGVDNNLLAKPRRRANFRLCNVSCYTSEVLEIQSDAPTLHVLFVPGNPGVILFYKDFVEFLYELLEGTASVTAIGHVSHSRKNLEHGRMFSLQEQIDHKIDFIREELENVEIPILLVGHSIGSYISIEMFKKSPEKVKYCIGLYPFLTLNPHSTTQLVIGKIAKSQVLAAALSYLTASLGLLPVQALRFLVRKSLGKSWSANAVEAACSHLSQYHTMRNVLYMAMTEFRKLSEAPDWIFMRERKAQLAFLFGVDDHWGPLHLLEEISKHVPGMATYIERENHTHGFCCTEAGSLWVAQHVVNLIKNQMACSNQ*