Glyma03g35820 - SoyBase

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Report for Sequence Feature Glyma03g35820

Feature Type:	gene_model
Chromosome:	Gm03
Start:	42925899
stop:	42926918
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g35820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36026	AT	Annotation by Michelle Graham. TAIR10: Ovate family protein \| chr2:15127265-15127816 FORWARD LENGTH=183	SoyBase	E_val: 2.00E-35	ISS
PF04844	PFAM	Protein of unknown function, DUF623	JGI		ISS
UniRef100_B3H6R4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ovate family protein n=1 Tax=Arabidopsis thaliana RepID=B3H6R4_ARATH	SoyBase	E_val: 8.00E-33	ISS
UniRef100_I1JQ68	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ68_SOYBN	SoyBase	E_val: 1.00E-134	ISS

Expression Patterns of Glyma03g35820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g35820

Paralog	Evidence	Comments
Glyma19g38480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g35820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g200200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g35820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g35820

Limit To All Plant Sequences

>Glyma03g35820.1   sequence type=CDS   gene model=Glyma03g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGCTCCCGAAAGAAGCTTCTTCTGAACACCGTGTCCGTGAAACTAGGCTGCGGCACCTGCAGAAGACCAAGCCTGCGTCGCATATTCCACCCAAAGCCAAAACCAAAGAATCTTAACAACAACACCAATTACCGAAAGCACAAACATTCTTCTTCTTCTTCTGCTTCTTCTTCCTTTTTTGCAAGCCAATGGGGGGGTGACAGCACCAGCGCCACCCCCACCAACACCAACACCACATTCTCACCCTACGTTGATTCCTCACACTTTTCTGACTCAGATTCCTACGTGAAGGCTGTGGGGGGTTTAGGCAGAGCTGGGAAAGAAGGTGTGGCTGTGGAGAAAGACTCTGATGACCCTTATCTTGATTTCAGACATTCCATGCTTCAAATGATATTGGAGAACGAGATATACTCCAAGCAGGATCTCAGAGAGCTTCTGAACTGCTTTCTTCAGCTGAATTCACCGCATCATCATGGTGTTATAGTCAGAGCTTTCACTGAGATCTGGAACGGTGTTTTCTCTGTGAGGTCCAGTTCTCACATCCACCTTAAGCCACTACTGGTAGAAAATAGAAATCACAATGGAGGACCTGAATGCACTGAGTATGGTCCCTAA

Predicted protein sequences of Glyma03g35820

Limit To All Plant Sequences

>Glyma03g35820.1   sequence type=predicted peptide   gene model=Glyma03g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGSRKKLLLNTVSVKLGCGTCRRPSLRRIFHPKPKPKNLNNNTNYRKHKHSSSSSASSSFFASQWGGDSTSATPTNTNTTFSPYVDSSHFSDSDSYVKAVGGLGRAGKEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKQDLRELLNCFLQLNSPHHHGVIVRAFTEIWNGVFSVRSSSHIHLKPLLVENRNHNGGPECTEYGP*

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